BAC Information

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BAC

Clone NameMSMg01-187N11
Chromosome14 (Build37)
Map Location 56,931,834 - 56,932,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082
Downstream geneAtp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187N11.T7 (MSMg01no187_n11.b1)MSMg01-187N11.TJ (MSMg01no187_n11.g1)
ACCAG379050AG379051
length741759
length of high quality
(start - end)		299 (9 - 307)266 (76 - 341)
definitionCHROMAT_FILE: MSMg01no187_n11.b1 PHD_FILE: MSMg01no187_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:16 2005CHROMAT_FILE: MSMg01no187_n11.g1 PHD_FILE: MSMg01no187_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATAGGGAGAGGATCCGCGGAATTCTCCAAATAATGGGGGAGACAATT
AGACATTTTTGTAACCAAAGTTTCCAATGCTGAGACTGGGTTACATCCAA
TTGAGTTGTTGGCCAAAGGGATTCCATGTAAATCACTAAACAACCCAGGC
TGTTGTCAAGACAATAGGGTGCTCTCCACAAACTGACAGCAAAGTCCCAT
GGGAATTCCCAAACAACTCATACTGTTGCCAAGACAATAGGTTGCTCTCC
ATAAATTAACAGTAAGCCCCCACTATTGAAGACAACACCAACACTTCTCA
CTGAACATAGGACGATCAAGTTGGTAACTACTTTTTTTCTTCACCCCTCC
CACTCTCTTTGGTATTATTATGTAATCTAGGTTTCCACCACCCCACAAAG
AAAAATATATCTACCCAATCTTTGATCCATAATGTTCTCTGCCTTGTAAA
CATGCTAGAGTAATGTCGGCACACTTCTTGCGTTTATTGACTTTCTACCT
CTGACTTCACTTTATTCCTTCTTTTCACTAACTTCACAATACTTTATCAT
TGTTTTTTTTATCCTACTTACCATCTTATCCCCATTTCCCCCCATTACAT
TTTCCACCTACCTTTTCCTATACTTTCCACATGTACTTCCTGCCCTTCTA
TTCGCCCTTCCCCATTCCCTCTCTTTTTTCCACCCTTTCCACTTTCTACC
TTTATCCCCTTTTTCACTTCCCTCACGCTCCATCTTCCTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAATTAACGCTGAGGATGACTTT
GAACTTCTGACCCTCTTGCCTCCATCCTCAAATGCTGCAACTCCTGCGGG
CATATGCACCACTCCCGGCTTCGGTGTGTTTGTTTAATTAAAACAGAAGC
AAAAAACAAACCAACAATAACTAGCAAAAGACATACTCCAGAAGAACAAA
ATCCCTTTATTTCACAACTCTTTTGTATATGTAACTTAATTTGCATATTT
CACAGGAGGGACCTGACTCTAAATCCCATGTTTAATGAAGTCACTTAGAG
ACTCATAATTTTTTTCTGCCCCCCCCACCCTAGTTGTTTTTTCTCTGGAA
CAGCTCTGATTCCCCCCCCATGACAATGAAATTGCCCCAGTTTCAAAGTC
TATAAATTTGGCTCCAGAGCTCATTTCCTTCTGCCCACTGGACTGTCTGA
TTTATTCCCTTAACCTCTAGGAAATCCAGCCTTTCCTTACGTTATACGCA
ATCAATCTGCATCATATTCCCTTAATTTTTTATTATCTTGTTCTTTTACC
ACATCATTTATTTGCCTTATCATTTTTACATTTTCCCTTTCTTATATCCC
TATATTTTCCTCTATTTTTATCTCCATTATTCGTTCTCTCCCCGCATTTC
TAATATATTATCTCCCCTTTTTAATCTATTACAACACTTCCTCACTTTTT
TCCCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_n11.g1 MSMg01no187_n11.g1 CHROMAT_FILE:
MSMg01no187_n11.g1 PHD_FILE: MSMg01no187_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:16 2005
         (266 letters)



>mm_chr14_56931623_56932288
          Length = 666

 Score =  422 bits (218), Expect = e-122
 Identities = 248/262 (94%), Gaps = 7/262 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   attaacgctgaggatgactttgaacttctgaccctcttgcctccatcctcaaatgctgca 64
           ||||||||||||| |||||||||||||||||||||||||       ||||||||||||||
Sbjct: 212 attaacgctgaggctgactttgaacttctgaccctcttg-------cctcaaatgctgca 264

                                                                       
Query: 65  actcctgcgggcatatgcaccactcccggcttcggtgtgtttgtttaattaaaacagaag 124
            || ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 265 gctactgtgggcatatgcaccactcccggcttcgctgtgtttgcttaattaaaacagaag 324

                                                                       
Query: 125 caaaaaacaaaccaacaataactagcaaaagacatactccagaagaacaaaatcccttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaaacaaaccaacaataactagcaaaagacatactccagaagaacaaaatcccttta 384

                                                                       
Query: 185 tttcacaactcttttgtatatgtaacttaatttgcatatttcacaggagggacctgactc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcacaactcttttgtatatgtaacttaatttgcatatttcacaggagggacctgactc 444

                                 
Query: 245 taaatcccatgtttaatgaagt 266
           |||| |||||||||||||||||
Sbjct: 445 taaagcccatgtttaatgaagt 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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