BAC Information

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BAC

Clone NameMSMg01-188E12
Chromosome14 (Build37)
Map Location 50,284,860 - 50,285,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188E12.T7 (MSMg01no188_e12.b1)MSMg01-188E12.TJ (MSMg01no188_e12.g1)
ACCAG379349AG379350
length810731
length of high quality
(start - end)
174 (145 - 318)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no188_e12.b1 PHD_FILE: MSMg01no188_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:53 2005CHROMAT_FILE: MSMg01no188_e12.g1 PHD_FILE: MSMg01no188_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTTCTCTTTTTATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTCCGTACCAGTTTCCACAGCAGCTGTAC
CTGTTTGCAATCCCACCAACAGTGAATAATGTTTCCTCCCTCTACTCCAT
CTTCTCCAGCATTTGTTGTAGGTTGTTCCCTTGATCTTTGTCATTCTGAC
TGAATAAGATGAAATCTCAAGGTTGGCTTGATTTGAATTTCCACTATATA
TTTTAAAGAATTTAAAAAAATATGTGTATGTTCTGCATTCATGGATATAT
GTGCATCATATGTATGTCTGGTGCCTAACAATGCCAGAAGGCATCGAGTC
TTCTGGAATTGTACTTACAGATGTTTTTATTTTTGTTACACCGCACCCCG
CCAAACTATCTCATTTCCTTCCATTATAGTATTCCCCGCTCTTAATATCA
ATAATCTCTCTCTAGCACCCATTCTTATATTTGCACTGACTCTCCATGTT
TCAAAATGTGTACAGTGATCTTCTTGATATTGTCTTTATATAGTGACTTA
TTCTCTGTCACTTTATTTATACCTTTCCTTGATAATTTTTCTACTACATT
AATTATTACCATTTTTCCTAAAAATTTTCGATTTTTTATCATTATTACTT
CAATATTTTTTTTCTTCTATTTTTCTTGTATTTTCCTTTTCCTTCTAACA
TTTAATAAAAACTTCTAATGAATATCTCTATTTATCCATAATCTCACATA
CTTACATATTTCACTCCTATATTTAATAAGATACACCCCTCATAATATTT
TTATAATTAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCACTTTCTTGGAGAAGAAAAAA
AAAAGAAAGAAAGAAAGAAAATATCAGCGAATGCAGAGAGCTCAGCTGCC
ATGTGGCTGAATTCTATTAAGCTTCTGAATTCTGTGATAGCTCAGTACAA
AGGACCATGTGCATACTCAAGGCGACATTCTCAAGTCACTCCTCTTGGTC
CATGATATTCTGGCTTCCTTGGAGAGTTATTTATAGACATCAAGTCGCAC
AATAGCTTTTTTTTTTTTGAGATGATAAGCATATGTCTGACTTGTCTTAC
ATAGTCCTAGTTTATGTTTGTTACCCCCCACCTACTTAATTTACATACTA
AATACACACTTAATCATGCCCCCCCTCAGAAATATGAAAATGCTCACTTT
CACTTTTGAGGACCCTGTACTCCTTACTTTACAATGACAAAATATCCCAC
TGGGAACAGCATAAGGAAAGAAAGGTATTTAGCTCATTGTTTCTCCATGC
AGTCCTACAGGGTATAGAACGTCCATGCCACATTTTCAGACAGTTTGCTG
TTTACCCTGTGACTGTGGCCATGTTGTCAGGGAGAAATAGACGCCCGAGC
CCCGTATAATTGCGCTTTTCTTACTATCTCCCCTCTCTCCCTTTACTCAC
TTTGACATCTCACCTCTTTGCATTGCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_e12.g1 MSMg01no188_e12.g1 CHROMAT_FILE:
MSMg01no188_e12.g1 PHD_FILE: MSMg01no188_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:53 2005
         (476 letters)



>mm_chr14_50284616_50285492
          Length = 877

 Score =  806 bits (417), Expect = 0.0
 Identities = 461/477 (96%), Gaps = 5/477 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   cactttcttggagaagaaaaaaaaaagaaagaaagaaagaaaatatcagcgaatgcagag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 719 cactttcttggagaagaaaaaaaaaagaaagaaagaaagaaaatatcag-gaatgcagag 661

                                                                       
Query: 63  agctcagctgccatgtggctgaattctattaagcttctgaattctgtgatagctcagtac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agctcagctgccatgtggctgaattctattaagcttctgaattctgtgatagctcagtac 601

                                                                       
Query: 123 aaaggaccatgtgcatactcaaggcgacattctcaagtcactcctcttggtccatgatat 182
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aaaggaccatgtgcatacccaaggcgacattctcaagtcactcctcttggtccatgatat 541

                                                                       
Query: 183 tctggcttccttggagagttatttatagacatcaagtcgcacaatagctttttttttttt 242
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 540 tctggcttccttggagagttatttatagacatcaagttgcacaatagctttttttttttt 481

                                                                       
Query: 243 ---gagatgataagcatatgtctgacttgtcttacatagtcctagtttatgtttgttacc 299
              |||||||||||||||||||||| |||||||||||||||||||||||||  |||||||
Sbjct: 480 tttgagatgataagcatatgtctgatttgtcttacatagtcctagtttatggctgttacc 421

                                                                       
Query: 300 ccccacctacttaatttacatactaaatacacacttaatcatgccccccctcagaaatat 359
           ||  || |||||||||||||||||||||||||||||||| |||||||  |||||||||||
Sbjct: 420 ccttacatacttaatttacatactaaatacacacttaataatgccccttctcagaaatat 361

                                                                       
Query: 360 gaaaatgctcactttcacttttgaggaccctgtactccttactttacaatgacaaaatat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaaaatgctcactttcacttttgaggaccctgtactccttactttacaatgacaaaatat 301

                                                                    
Query: 420 cccactgggaacagcataaggaaagaaaggtatttagctcattgtttctccatgcag 476
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cccac-gggaacagcataaggaaagaaaggtatttagctcattgtttctccatgcag 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space:   404022
Effective search space used:   404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)