BAC Information

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BAC

Clone NameMSMg01-188G23
Chromosome14 (Build37)
Map Location 47,373,144 - 47,510,873
singlet/doubletdoublet
Overlap geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4
Upstream geneLOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188G23.T7 (MSMg01no188_g23.b1)MSMg01-188G23.TJ (MSMg01no188_g23.g1)
ACCAG379456AG379457
length739722
length of high quality
(start - end)
312 (63 - 374)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no188_g23.b1 PHD_FILE: MSMg01no188_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:05 2005CHROMAT_FILE: MSMg01no188_g23.g1 PHD_FILE: MSMg01no188_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,510,566 - 47,510,873)(47,373,144 - 47,373,428)
sequence
NTTTTTTNNNNNCCATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTTCACATTCACCAACTGAAGAAGAAG
AAAAAAAAAAAACCACTGATCATTTACTTAGAAATATTAAGTTGGGTTGC
AGTTTTTAGAATAACCAAACACAAAAGGTCGTTCATGGTAGTGACATCAA
TTCCTTGATACTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG
TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGC
CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGAGTGCGCCACCTTGATA
CTTTTTAAATGCAAAGGTCCGCACTGATTTTAACAGCCCTGCGCCAGACC
CTATAATGAGACAAGTTCAAACCTGAAGGCTAAAACAGAGCTTCATTGGA
TCATTAACCAGGAACTTCTAGACAATGAACAATGAGGTTTATCACCATCA
CCATGAGAAAACCGAAGCTCAGAAACTGACTTAGTCGTCCTGTCTGACAG
ATCTCAGATCTGCACTCCGAGAATCCTCTATGGCTTCTGCCTGCCTGTGG
ATATAGACGAACAAGCTTGGGGACAATACCTTTCTTCTCTTTCTAGTGCA
GTCCTTCTTTCTTCCCTTCACACTGGTGCTGACAGCAGCCACACTGCCCT
GAGACAATGGCACCAAGGGAAACTGCCAGAACTAAGTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTACCAAGCCCAGGGAGATCATT
TTCCTAAATGACAAATAAAAAGAATAACTTAGAGTTATCTAGATGTACGC
TAAAAATTGATGTAAAATATTCATTTGAATCAGAGAAGACTGCAAAGGAG
AGAGTGCCCAAAGAACACAGTGGCCTTCTGTAGCAACCGGTGAGCTGAAG
TGCAAACTACTGTATATGGAAAAACAAAACCAGTTCCCAGAACTGATTTT
TTTCACTCATGGAAGCTGCAGGAAGGAGGAGAGAACATGGAAAGGTGGAG
AGTGGCTAGGGATTTTTTTACAACTCCCCCCCTTTTTTAAAACCTTAGAA
AAATTTATACGTACATATTTGTGTCTGAATCAACATATGTCACACGTAGG
TGCTCTCAGAGACCAGAAGAAGGCATCAGTTCCCCTAGAACTGGAGTTAC
ACGCAGCTGTGAACTGCCTTGGTTTGAGACAGTAGGAACTGAACTCAGGT
CATCTCCAAGAGCAGCCAGTGCTCTTAACGACTGACCAGCTCTCCGACTC
TACTTCAGAATTTTAGTGAATAGCTTTCCTTTGCTAATAAACTCTCCCAA
ACTCGGATCTCCAACCATCAGAAAGACTGGAGACCTCTTGATCTGGTGGA
CCATATTTTTTTCTTTTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_g23.b1 MSMg01no188_g23.b1 CHROMAT_FILE:
MSMg01no188_g23.b1 PHD_FILE: MSMg01no188_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:05 2005
         (312 letters)



>mm_chr14_47510524_47511235
          Length = 712

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttcacattcaccaactgaagaagaagaaaaaaaaaaaaccactgatcattta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaattcttttcacattcaccaactgaagaagaagaaaaaaaaaaaaccactgatcattta 291

                                                                       
Query: 65  cttagaaatattaagttgggttgcagtttttagaataaccaaacacaaaaggtcgttcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cttagaaatattaagttgggttgcagtttttagaataaccaaacacaaaaggtcgttcat 231

                                                                       
Query: 125 ggtagtgacatcaattccttgatacttttttttgagacagggtttctctgtgtagccctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ggtagtgacatcaattccttgatacttttttttgagacagggtttctctgtgtagccctg 171

                                                                       
Query: 185 gctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgcct 111

                                                                       
Query: 245 ctgcctcccaagtgctgggattaaaagagtgcgccaccttgatactttttaaatgcaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctgcctcccaagtgctgggattaaaagagtgcgccaccttgatactttttaaatgcaaag 51

                   
Query: 305 gtccgcac 312
           ||||||||
Sbjct: 50  gtccgcac 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no188_g23.g1 MSMg01no188_g23.g1 CHROMAT_FILE:
MSMg01no188_g23.g1 PHD_FILE: MSMg01no188_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:05 2005
         (285 letters)



>mm_chr14_47372944_47373628
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaccaagcccagggagatcattttcctaaatgacaaataaaaagaataacttagagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaccaagcccagggagatcattttcctaaatgacaaataaaaagaataacttagagtt 260

                                                                       
Query: 61  atctagatgtacgctaaaaattgatgtaaaatattcatttgaatcagagaagactgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctagatgtacgctaaaaattgatgtaaaatattcatttgaatcagagaagactgcaaa 320

                                                                       
Query: 121 ggagagagtgcccaaagaacacagtggccttctgtagcaaccggtgagctgaagtgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagagagtgcccaaagaacacagtggccttctgtagcaaccggtgagctgaagtgcaaa 380

                                                                       
Query: 181 ctactgtatatggaaaaacaaaaccagttcccagaactgatttttttcactcatggaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctactgtatatggaaaaacaaaaccagttcccagaactgatttttttcactcatggaagc 440

                                                        
Query: 241 tgcaggaaggaggagagaacatggaaaggtggagagtggctaggg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaggaaggaggagagaacatggaaaggtggagagtggctaggg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)