BAC Information

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BAC

Clone NameMSMg01-188H24
Chromosome14 (Build37)
Map Location 84,033,476 - 84,033,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188H24.T7 (MSMg01no188_h24.b1)MSMg01-188H24.TJ (MSMg01no188_h24.g1)
ACCAG379501AG379502
length702746
length of high quality
(start - end)
193 (101 - 293)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no188_h24.b1 PHD_FILE: MSMg01no188_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:10 2005CHROMAT_FILE: MSMg01no188_h24.g1 PHD_FILE: MSMg01no188_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATTCCGAGGTGCGCGGAATTCAAGAGAAATAACTACAAAAAAG
TAATATTTTTAATACTGAGAATATTACTTAGTACTGAGATGTTTTCCCTT
TATTTTGTCAAGAAACCTCTGAAAATTTTTTTATTAGGTATTTTCCTCGT
TTACATTTCCAATGCTATCCCAAAAGTTCCCCATACCCGCCCCCACAATC
CCCTACCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGG
GCATATACAGTTTGCGTGTCCAATGGGCCTGTCTTTCCAGTGATGGCCTA
NATGCCATCTTTTGATACATATGCAGCTAGAGTATTTTTTTTTCCCCCCC
ACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGCTCCCTTTA
AATAATTGGGTACTTTCTCTAGCTCCTCCATTGAGGGCCGTGTGACCCAT
CCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCGGCAT
AGTCTCACAAGAGATAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTA
GTGTATGCAATGGTGTCAGCGTTTAGAAGCTGATTATGGGATGGATCCCT
GGATATGGCAATCACTATATTGGCCAACATTTTTTTTTTTTTTTTTTTTT
TGACCCTGCAACTCCTTTCATTGGTGCCTTGTTCCAATTCCTACTAAATT
CN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTGTATTATCTTGAAAAATGA
CTTTTATGTTCATAAAGAGAAAGGCCAATAATTTATGTCTTTTTATTGTT
TCTTTTTCTAGTTTCATGTCATCTCTGCCAAGATAAGCTACTTGCACAAT
AGTGGCACAAATGTTTGGCAACACCCCAAATTGCATTCCAGTGGGATTTA
GCGCCCACTTCACAAGATGCATGGAGCTGCAAGAGTCAACAGCAATAGAG
GTAACACCCATGGCACAGTCTAAACTAGGGGCTCTCAACCTGCAGGTCGT
GGCCCCCTTGGGGCTGATTTTTTCTTTCACACCACCCACACATATCTGAT
ATCCTACCTATAAGATATTTACATTATGATTCATAGCAGCAAAATTACAG
TTATGAAGTAACAACAAAATAATTTTATGGTTGGGGCAGAGGGTCACCAC
AGCATAAAGAACTGTGTTAAAAGGTGGAAGGAAGCATTAGGAAGGTTGAG
AACCATTGGTCTGAACACTTGCCTGATCTGGAAAGGCATCAAACATGGTT
CCCATGCCATCCTTGGAGCCGAACTTGGAGACCTTGAAAGGCCAGATGAC
ATCCTGTGGGGGGTGTTTCTTTCCCTCCTTTCTTTCTTTCATATCTTTTT
TTTTTTTTTTTTCCCTACTCCTTATACATCCCCTTCTTTTTATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_h24.g1 MSMg01no188_h24.g1 CHROMAT_FILE:
MSMg01no188_h24.g1 PHD_FILE: MSMg01no188_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:10 2005
         (292 letters)



>mm_chr14_84033276_84033967
          Length = 692

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgtattatcttgaaaaatgacttttatgttcataaagagaaaggccaataatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgtattatcttgaaaaatgacttttatgttcataaagagaaaggccaataatttat 260

                                                                       
Query: 61  gtctttttattgtttctttttctagtttcatgtcatctctgccaagataagctacttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctttttattgtttctttttctagtttcatgtcatctctgccaagataagctacttgca 320

                                                                       
Query: 121 caatagtggcacaaatgtttggcaacaccccaaattgcattccagtgggatttagcgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 caatagtggcacaaatgtttggcaacaccccaaattgcattccagtgggatttagtgccc 380

                                                                       
Query: 181 acttcacaagatgcatggagctgcaagagtcaacagcaatagaggtaacacccatggcac 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttaacaagatgcatggagctgcaagagtcaacagcaatagaggtaacacccatggcac 440

                                                              
Query: 241 agtctaaactaggggctctcaacctgcaggtcgtggcccccttggggctga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctaaactaggggctctcaacctgcaggtcgtggcccccttggggctga 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)