BAC Information

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BAC

Clone NameMSMg01-188M16
Chromosome14 (Build37)
Map Location 83,863,908 - 83,864,190
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188M16.T7 (MSMg01no188_m16.b1)MSMg01-188M16.TJ (MSMg01no188_m16.g1)
ACCAG379698AG379699
length7971,390
length of high quality
(start - end)
286 (58 - 343)---
definitionCHROMAT_FILE: MSMg01no188_m16.b1 PHD_FILE: MSMg01no188_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:33 2005CHROMAT_FILE: MSMg01no188_m16.g1 PHD_FILE: MSMg01no188_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCAAATTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCATGTAACAATGGCAGAAAGAATTATATAATTTT
CCTCTGTGGCAGCAACCCTTAATCTCCATACTGTAGTGTATGTATTATCC
TTATTCAAACCTCATTCCAAACTTCAGCAGTCTATGTGTTAAAATATAAC
AAAATCCGTTATCATTTTGGGATTTATTTTGGAATATATATTTCACTATT
TTATTCTCATATTAATTACATTGTGTCCACCATTCTAAAACTTAAGTCAG
GGTTTTATTTGGGAAAAAAGTATTTAATAAAAGTTTTTAAATTATCCAGG
CAGCGGTGGCACTTTATTCCATTTTATTGTTTACCACCCCCCCCCCTCCA
TTTCTGATTCTAGACCAGCCTGGTCTGAACGACTTCTATAAAAAAAAAAA
ACAGAGAAGCCCTGTCTTAAAAAACCAAAAATAAGAATAAATAAGTATTT
GAATTAAATCTAATAACTGAAATATGTAAACTAATGATAACTACCTATTT
TCTCCTTTCTGAAAACTTTTTCTGTCCTATTTTAATTGTTTACATATGTC
TTTTTTTGTAAATGCTTTTACTATGTTGTCCTTTTTATCTTTTTAATTTT
GTATTTTTATTATATATTCATCTGTTTTTGCTTTTCTGTTTATATATTAA
TTAATTGAACCAGTAAGATATTTAATGTAAATGCCTGATAAATGCTTCTT
TCTATTCTTTATTTATCTTTTTCTTTTATAATTATACTTAAAGTTTN
TCGCCGTGCGCGGCGCTCTTCCTTCCGTCCCGTCATATCCCCTTTATACT
TTTTTCCCCTCCGGGAATCGCAAATTGCAACTAGTCCTTGGATTAGAGGT
CGCTGTTTTTCCCCACACACGCGAACCGAGTCCTCTACTAGTAAGAGATC
TCGCCGCGCAATCGTCGGGACGGTTGTCGGGATCGATTTATGCCGCCGTC
GCCGCCATTGTTCTACGATCCGCTTTCTTGGTCCCCGCCGTAGGCGATGT
CGTTCGTGTATTCGCGTGGTTATCTGCGCGTTGGAATACAGGTCGCTCGC
GGGGTCGGTGCGCCCCCACAATGTTCGTCGCTCGTTGCCGCTTCGCGCGC
ATATCTGTCCTCCTCATCTGCGCCGTCTCGCGGTGGTTAAATGACGTCGA
TGTTTTAGTATTTACTACCGGGCTGATTATTATTCTTTCTTTCACGTTGC
GCCGTCGCCTCTTCGTCGCGCTCTTTGTCTTTTTTGTTCTCGCGCACGTT
ATTTATAAAGTAATATTGCGCTCCGTATATANTCCCTCCTATATCGGCAT
GCTTGTATGTTTCTACGTCGGCTCGGCGTATCACAGATATAGCGGGCTNT
CGTANCGGATACACGCGTCGTTATTAGGCGATGGGNATCTCCCCCAGANG
GACAGGAGGAACCCCCCGCGTGTTATATTATCGCGTATTCGAGTGAGCGC
GTCGGCGCTTGTCGCGGCTCTGGCCGCCCCCCCCCACCCAATAAACATNT
TATTNCAAAAAAANCCTCTCGTTGTGGTGTCCTGCCTCCGGTCGCGCGTC
CGTCTCGTATATCTACGTTCTCGCGCGCGTGTTCCGGCCGGACGAATATC
CGCGTAANACTTATGCGCGTACTTNGCTCGTTAATGCGTCCTCACTATCG
TATATACGACCCGCTGGAGACTCGGGTACAGGTTCATTCGAGCGGCGTCG
CGAAGACGAATTGGCAATCTAATGTTATTATGTGACTACGGTGGGAGCCG
CGCGCTCACGCGCGCTGCTGTATCATAACGTTTCCCGTCTCGTGGCCTAA
TTCGCGAGCGTATTAATATCACCNCGACGCTCTAATATNCGCGCGTACTA
TTCCGGCGCGCGTATCCGCGCANGACGCGTTCTAAATAGACCGATATGTT
TACTAGCNATGAATATGTNGTGTGACTGCGAGTAAGTNGTCCGCATCACT
ATCACACGGCGCGCGTAGTAACGCACATATGCTGGAGGACGCACGCTTGA
TATCGTATCCCCGTATATAATTGCGCAGCGCGCGTTACGACATTCTCCGC
GCNTGTCGCGTATCTGTCCGGCTATATGATACTCAGTNANGTCTCGACTC
ACACGCTNGTCGCGTGACTTGTATCGCGCGCAGTACGNTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_m16.b1 MSMg01no188_m16.b1 CHROMAT_FILE:
MSMg01no188_m16.b1 PHD_FILE: MSMg01no188_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:33 2005
         (286 letters)



>mm_chr14_83863704_83864390
          Length = 687

 Score =  485 bits (251), Expect = e-141
 Identities = 275/283 (97%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtaacaatggcagaaagaattatataattttcctctgtggcagcaaccctta 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 487 gaattcatgtaacaatggcagaaagaattatataattttcctctgtggcagcaaccttta 428

                                                                       
Query: 65  atctccatactgtagtgtatgtattatccttattcaaacctcattccaaacttcagcagt 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 427 atctccatactgtagtgtatgtattatccctattcaaacctcattccaaacttcagcagt 368

                                                                       
Query: 125 ctatgtgttaaaatataacaaaatccgttatcattttgggatttattttggaatatatat 184
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 367 ctatttgttaaaatataacaaaatccattatcattttgggatttattttggaatatatat 308

                                                                       
Query: 185 ttcactattttattctcatattaattacattgtgtccaccattctaaaacttaagtcagg 244
           |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 307 ttcactattttattttcatattaattacattgtatccatcattctaaaacttaagtcagg 248

                                                      
Query: 245 gtttt-atttgggaaaaaagtatttaataaaagtttttaaatt 286
           ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtttttatttgggaaaaaagtatttaataaaagtttttaaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)