BAC Information

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BAC

Clone NameMSMg01-189I22
Chromosome14 (Build37)
Map Location 9,519,765 - 9,520,050
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneLOC100041948, Fhit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189I22.T7 (MSMg01no189_i22.b1)MSMg01-189I22.TJ (MSMg01no189_i22.g1)
ACCAG380202AG380203
length775751
length of high quality
(start - end)
77 (45 - 121)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no189_i22.b1 PHD_FILE: MSMg01no189_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:34 2005CHROMAT_FILE: MSMg01no189_i22.g1 PHD_FILE: MSMg01no189_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGGCAGGAGGTGGGAGTGGGTGGGTGAATGGGTGAGTACCCTCA
CAGAAGCAGGGTAAGGGGGATGGGACCGTAGGGATTTGCAGAGGGGAAAT
TGGGAAAAGGGATAACATTTGAAATATAAACATAAAATATTCAAGTTAAA
ATAATCATAAACCAACATGGACACAATGGTATAGTAAGTGAAAGGATGGA
GATAAAGTGAAGGCTAGTCGAAGAGGAACATTTTTTTTCAGTATGTGTGA
GAAGATAAGAGATAGAAAAGAAACTTGTTTTTTTTTGGAGGAGATAAAGA
ATGGAGAAAGNAATTATTTGGGTGGACCTCAAAAGCAAATTCCTTTTATG
TATTTTGTGTTGTGGGTTTGGTTTGTTNNNNNAAAAATGTNGATTTTTAA
AAGGGGGGGGGGGGGGGGGGGTTTTTTTTTGTTGTTTTTNTATTTNTNTT
TTATGTGGTGAATGGGTGTTTAAATATGAAGAAGAATGGAAGTTGATAGG
AAAGTTGGATTAGTGATGAGGTAAATTTAATGTAGAATGGTATAAAGATG
GTTTGAAAAGAGTAGATATTAGTTTGTGTGTGTAAAAGGGGGGTGTGGGA
TTTTATATTGAAAGGTGTAGAGAAGGAGATGGGGTGTGATGTTTTATTGT
GAGGTATTTGTTTGATTAGTTTATATTAGAATAGATGAATTGAATTTGAA
AGTGGTATTTAAAGATTGTGTGTGG
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGATCTGGTAAATTTGTGAGGAAT
CCAAACTCTACTAATGAGAGACTCCACACCCATTTTCACAATCTGTAGTC
TGGCTGGAGCCCTTTGAAATCCTGAGCTCAAAACCCTAAGCATACGTGTA
GTAATTCTTCTCTTTAGAGGCCACAAGTGACAGCTGTGTCCAGTCTGAAT
ATCTCTTCATCTGGAAGGAATAGAACCAACTCAATTTTTTTACACAAATT
TTACTTTTCTTAAGAATTATCCAGAAGCAAAGAAAATGCCTCAAACTAGA
AAAGTGATTCCAATTTTTTCTCACACCCCCCCGCCCAAAAAAATGATAGC
ACCTGAGTAGTTCCTAAAAGATCTACATTAAAAAAATTTGTTAGTATATT
CATTTTTCTAAAATCTATCAGAGGATTTCACAGCTGCTTAGATGTATAGT
GACTACTTAATTTATTCACCCATCTATTTAACAGCATGGACACCGGCAAT
ACAGCAACAACCAAGGTAAATATAGTCCCTGTCCTTGGAGGACATATGTA
CAAAAAGAAAATAACTAAGCTAGACAATATACCAAATAGCCACAGATCAG
GGTGAAGGATATACTTCTATAAAACAATCACTAAAAGAGGTATTCCATCT
TATTTGTCAGGCGAAGCTTTATTGACAATTGAAGGATAAAAAGAATTTAA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_i22.g1 MSMg01no189_i22.g1 CHROMAT_FILE:
MSMg01no189_i22.g1 PHD_FILE: MSMg01no189_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:34 2005
         (286 letters)



>mm_chr14_9519565_9520250
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatctggtaaatttgtgaggaatccaaactctactaatgagagactccacacccattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgatctggtaaatttgtgaggaatccaaactctactaatgagagactccacacccattt 427

                                                                       
Query: 61  tcacaatctgtagtctggctggagccctttgaaatcctgagctcaaaaccctaagcatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcacaatctgtagtctggctggagccctttgaaatcctgagctcaaaaccctaagcatac 367

                                                                       
Query: 121 gtgtagtaattcttctctttagaggccacaagtgacagctgtgtccagtctgaatatctc 180
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgtagtaattcttctcgttagaggccacaagtgacagctgtgtccagtctgaatatctc 307

                                                                       
Query: 181 ttcatctggaaggaatagaaccaactcaatttttttacacaaattttacttttcttaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttcatctggaaggaatagaaccaactcaatttttttacacaaattttacttttcttaaga 247

                                                         
Query: 241 attatccagaagcaaagaaaatgcctcaaactagaaaagtgattcc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attatccagaagcaaagaaaatgcctcaaactagaaaagtgattcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)