BAC Information

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BAC

Clone NameMSMg01-189L16
Chromosome14 (Build37)
Map Location 85,202,627 - 85,202,985
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189L16.T7 (MSMg01no189_l16.b1)MSMg01-189L16.TJ (MSMg01no189_l16.g1)
ACCAG380314AG380315
length714756
length of high quality
(start - end)		670 (45 - 714)362 (392 - 753)
definitionCHROMAT_FILE: MSMg01no189_l16.b1 PHD_FILE: MSMg01no189_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:46 2005CHROMAT_FILE: MSMg01no189_l16.g1 PHD_FILE: MSMg01no189_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCCGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATGTT
CAATCATCAGGGAAATGCACATCAAAACAACCCTGAAATTCTACCTCACA
CTAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCT
AGGATGTGGAGAAAGAGGAACGCTCTTCCATTGTTGGTGGGATTGCAAAC
TTGTACAACCATTCTGGAAATCAGTCTGGCGGTTCCTCAAAAAATTGGAC
ATAGTACTACTGGAGGTTCTCGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTTACAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTACTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAACGTGGTACATTTACACAATGGAATACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC
TGGAGGGTATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACAG
AATATATACTCACTGATAAGTCCAGAAACTTAGAATACCCAAGATATAAG
ATACAATTTGCTAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTTT
GAACACTTTGCCCC

NNNAATAATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTAAGTCAAACAA
CAAGAAAAGAAATCAAGCAAACCAGAGATGCTAATAGCTCAGTTTGCTCT
GCACTATTACAGGACACATAGGAACAGACATACACAATATATACACGTAT
ATAATAGTGTTATTTATTGCCTGAAAATGTGGTAGTTAACTTTCCATTTC
TGCGGCAAATTACTTGAGTTGAACACATTTAAAGGAGAAAATATTTATGT
TTTCCTCATTATTTTTTAGTTTAATAATAGTAATTTTAAAATTATACTAT
ATTTGAGAAAAGCATGTGTCATAATTCTTTATACTACCTTACCCAAGAAT
GGCAGAATATACTTTAATTACAGCATGCTAGAGGCAGAAGCAGAGGAATT
TCTATTAACTCAAGGCTATACTGGGTGACACAGTAAGTTTCAGAATGGTC
AGGTCTACACAGTGAGATGGTATCTCAGCATAAAATAACAGTAAGTTTAT
TAGCACACATAGTGTTAAAGAAGAACTTTTATTGTTGCACCTTGTTTAAT
AATATCAAAACATTTTTAAAAATTAGAGAATAGCCTTAGGATTCTGACCT
TGCTATTGCATAAAGTTTCTATGAAGGAGCTCTTTCTCACTGAGCAAATG
AGACAATAAGATAAAGTGGAAAACAGAAGGAGATAGAAGATAAGAATAAA
TGCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_l16.g1 MSMg01no189_l16.g1 CHROMAT_FILE:
MSMg01no189_l16.g1 PHD_FILE: MSMg01no189_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:47 2005
         (362 letters)



>mm_chr14_85202280_85203041
          Length = 762

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaagaatggcagaatatactttaattacagcatgctagaggcagaagcagaggaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cccaagaatggcagaatatactttaattacagcatgctagaggcagaagcagaggaattt 647

                                                                       
Query: 61  ctattaactcaaggctatactgggtgacacagtaagtttcagaatggtcaggtctacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctattaactcaaggctatactgggtgacacagtaagtttcagaatggtcaggtctacaca 587

                                                                       
Query: 121 gtgagatggtatctcagcataaaataacagtaagtttattagcacacatagtgttaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gtgagatggtatctcagcataaaataacagtaagtttattagcacacatagtgttaaaga 527

                                                                       
Query: 181 agaacttttattgttgcaccttgtttaataatatcaaaacatttttaaaaattagagaat 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 526 agaacttttattgttgcaccttgtttaataatatcaaaacattttttaaaattagagaat 467

                                                                       
Query: 241 agccttaggattctgaccttgctattgcataaagtttctatgaaggagctctttctcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agccttaggattctgaccttgctattgcataaagtttctatgaaggagctctttctcact 407

                                                                      
Query: 301 gagcaaatgagacaataagataaagtggaaaacagaaggagatagaagataagaataaa 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagcaaatgagacaataagataaagtggaaaacagaaggagatagaagataagaataaa 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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