BAC Information

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BAC

Clone NameMSMg01-190F02
Chromosome14 (Build37)
Map Location 37,166,072 - 37,166,359
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190F02.T7 (MSMg01no190_f02.b1)MSMg01-190F02.TJ (MSMg01no190_f02.g1)
ACCAG380705AG380706
length736769
length of high quality
(start - end)
320 (46 - 365)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no190_f02.b1 PHD_FILE: MSMg01no190_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:31 2005CHROMAT_FILE: MSMg01no190_f02.g1 PHD_FILE: MSMg01no190_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATCATGGATAAATAACCAATACTCCAGGGTGTATACAACATTAG
TCATGGTTATGCAAAGAAATATCACTGATAGAATGAATAAATGAGTAGTC
CAATAATGGATGTCTCTCATCAAAAAGGCCCAGGGTCTAACAGTAGTTCA
GTACATGACACTGGATGTTTCCATCCTTTTAATCTGATGCTGGAATCCCA
GGGAATTTCTGGAGAGATGCTGGCCTTCAGGCTATATTGATATGTCAAAA
TAGATCCTAACACTAGTGAGGTAATTCCCCAGGAGCAAGATAGATGAACT
TGCCATTGAAAGTTATTTTTAGCACCCCCCCCCCACAGCTCCCTTTTTTT
CATCTTTTATGTGAGCTACCACCAGAAGATGTGAACAGAGTTTAGGTAGA
TCTTCTCATACCTAATGATCCAATCAAGAGTTCTTCACAGGTATGTATAG
CTGCTTGGGATTTAGTTAATTCCCAATGTAGTCTAGTTGTTAACCAAGAT
TAGAGGTTCTTCCATTTGAATGACATTCCGATTTTTATAACCGTCAGCGC
TGACCACGTTTCATTATTTTCGCATATTAAAATGCCTATTAACTATTTCC
CCGATCGAAAATTATGTCTAAACCCCCCTGTTAAGTTTACTTATCCTATT
TTTTTTTTCTGGTTTTTCACTTAACAACGGGATTCC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTTTATTTGTTTGGCAACCA
GATCTCAGCTCATTCCTTTGAGGCCAGTCTTGGAGGGTGCTTCCTGATTT
TTTTCTAATGCATTACAAGCAAGTCAAAGGCTTTCTTTTCCGGTCTTAAC
CCATTCTATTCAGTCAAATTTCTTACAGAAAACAAAAAGGAAATTGTTGG
TTTCATTGACATACAGTTCTTAGAAGAGTTAACATTATAGACACAGAAAA
TAACATGGCAGCTGCCAGGGACTAGAAAAAGGATGACAAGTTAATACTTA
ATGATTTCAGGTTTATTTATTATTACCCCACCTCCCCCAATTGTGGAGCT
ACTTGTTCATAATGGAAACACAATACTGTGATTGCATACAACACCACTGA
ATTGAATCCTCATAATGCTGACCATGCTACTTTTACGCAATGTGCATTTT
ATCATCACAAAAATTGCGGGGAGTGTATAATATCATTAACCGCATTGCAA
CTAGAGATGGCATATCGCGTTTAGAAAGATAAAAACACCTATTCCTTTTT
TCTTCCCCTTCCACTTCCCTTTACTTTTTTCACTCCTTTCCTTTCTTTTT
TCCCCAATATCCCATTATTATATAAACATTCTCATCCCCCTTTCCCCACC
CTCACCCTATTTATAATTTCGTTAATTTAACCTTTATTATCATAAAAACC
CCCCCCCACACCCCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_f02.g1 MSMg01no190_f02.g1 CHROMAT_FILE:
MSMg01no190_f02.g1 PHD_FILE: MSMg01no190_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:31 2005
         (290 letters)



>mm_chr14_37165872_37166559
          Length = 688

 Score =  482 bits (249), Expect = e-140
 Identities = 280/291 (96%), Gaps = 4/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctttttatttgtttggcaaccagatctcagctcattcctttgaggccagtcttggag 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 488 cttctttttatttgtttggcaaccagatctcagctcattactttgaggccagtcttggag 429

                                                                       
Query: 61  ggtgcttcctgatttttttctaatgcattacaagcaagtcaaaggctttcttttccggtc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggtgcttcctgattttttgctaatgcattacaagcaagtcaaaggctttcttttccggtc 369

                                                                       
Query: 121 ttaacccattcta-ttcagtcaaatttcttacagaaaacaaaaaggaaattgttggtttc 179
           |||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttaacccatt-tatttcggtcaaatttcttacagaaaacaaaaaggaaattgttggtttc 310

                                                                       
Query: 180 attgacatacagttcttagaagagttaacattatagacacagaaaataacatggcagctg 239
           ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 309 atttacatacagttcttagaagagttaacattatag--acagaaaataacatggcagctg 252

                                                              
Query: 240 ccagggactagaaaaaggatgacaagttaatacttaatgatttcaggttta 290
           || |||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 251 ccggggactaggaaaaggatgacaagttaatacttaatgattttaggttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 688
Length adjustment: 9
Effective length of query: 281
Effective length of database: 679
Effective search space:   190799
Effective search space used:   190799
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)