BAC Information

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BAC

Clone NameMSMg01-190H13
Chromosome14 (Build37)
Map Location 89,225,994 - 89,307,913
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190H13.T7 (MSMg01no190_h13.b1)MSMg01-190H13.TJ (MSMg01no190_h13.g1)
ACCAG380805AG380806
length693789
length of high quality
(start - end)		314 (45 - 358)286 (138 - 423)
definitionCHROMAT_FILE: MSMg01no190_h13.b1 PHD_FILE: MSMg01no190_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:43 2005CHROMAT_FILE: MSMg01no190_h13.g1 PHD_FILE: MSMg01no190_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,225,994 - 89,226,303)(89,307,628 - 89,307,913)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTCTGGTGCTTCAATATATAAACCACTCACATTGTCTATATATT
GACTAAAATTTTGGCTGTAGCTTAAATTTAATTTTTTCAATTATTAAATG
GGCACAAATTTTGGATATACTCATTACTGAAAAACATCAATAGACCTAGC
ATCAGCAAGTTAAGGCATAATTTTACAAAACAGTTTAGCTAAGTGAGATA
ATATTTAGAAATATTTGATCATTTACAAAGTTATCTATATGCAATATTTG
CTTCTCATTATGAAATATTTTTTAATATTTAAATTATCTACATTCTATAA
AATATGTATGCTAACCACCCGCTCAGCATAAAATGTGAACTATAAAAATT
TTCATAATCATCATTTACCTGATTTACCTGAATTATTTGAATGCTAATGA
AGATCTGTTATTGAGTGGCTTTTGTATGGTACATAATTTCTTCTTTTTAC
TTTTGTGATTAAACATTCACTCTATTTTAGATATGCCTGTTCACTACTTA
ATGACTATAAGAGTCAATAGTGAAGGTTTCCACATCTGGAAAGATATGGT
TGCTAGAAAATTAATGTATTCCATCACCAGCATTCAAGTTAATGCAATAT
CCAATGAATGAGAAATTGAGTGACTATCAATCAAATTGTTGAA

ATTTTAATACATTTTTTTTTTCCCACCACANATTTTTAATTTNTNGGGCC
CGCNNNNTAATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCAGTATTAA
CTGTTTTATGTCCAAACAGATTTTCAACAGTTAATTTCTACCACTAGCTT
TTTAAAATCTTTCTACTCCTGTATTTTTTTTTAATTTTAAGGGGAGGGAG
AATGAGCTAGAGATTTTGTTGTAATTACATGTTTAGACATACTTTGCTCA
AATATTTTATTGCTGATACAGAGAGGTGATTTTCTTTAAGTATTTTTATG
AAATACCTAATGTTTTCGTCCATGAATAATGAGTTCTTAGACATGTTATA
GAGCAATATCAGGTAATAAATATTTTATATCACCCCCCCCCACCCAGCTT
CTCAAGTGACATAAATATGAATTAGACCTATTGTGCTCCTTATGAAATGA
TACAGTGGTTCTATCTGAGAGTTCTGGCCTATGTCAGTGTGAGCATGGAC
GCGCTTGAGTGGAAACTCAGGCCAATCAAGAGATATTAAAGCATCAGCGA
AGTTCATGACCACTTTTTATTTTTATTTTAAATTATTGAAATTTGTGTTA
CATTCTCTTGCTGCAAAGAAAAGAATTGCCTTTCCAGATACTCTGAAAAA
AAAATTGAAGGTGCATACAAACCTGCTTCCTCATTTCACCTGTTTTCCCC
TGGAAAAAATCAGGTTCATCGATATCTCTCTCCATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_h13.b1 MSMg01no190_h13.b1 CHROMAT_FILE:
MSMg01no190_h13.b1 PHD_FILE: MSMg01no190_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:43 2005
         (314 letters)



>mm_chr14_89225790_89226503
          Length = 714

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttctggtgcttcaatatataaaccactcacattgtctatatattgactaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttctggtgcttcaatatataaaccactcacattgtctatatattgactaaaa 264

                                                                       
Query: 65  ttttggctgtagcttaaatttaattttttcaattattaaatgggcacaaattttggatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttggctgtagcttaaatttaattttttcaattattaaatgggcacaaattttggatat 324

                                                                       
Query: 125 actcattactgaaaaacatcaatagacctagcatcagcaagttaaggcataattttacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcattactgaaaaacatcaatagacctagcatcagcaagttaaggcataattttacaa 384

                                                                       
Query: 185 aacagtttagctaagtgagataatatttagaaatatttgatcatttacaaagttatctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacagtttagctaagtgagataatatttagaaatatttgatcatttacaaagttatctat 444

                                                                       
Query: 245 atgcaatatttgcttctcattatgaaatattttttaatatttaaattatctacattctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgcaatatttgcttctcattatgaaatattttttaatatttaaattatctacattctat 504

                     
Query: 305 aaaatatgta 314
           ||||||||||
Sbjct: 505 aaaatatgta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no190_h13.g1 MSMg01no190_h13.g1 CHROMAT_FILE:
MSMg01no190_h13.g1 PHD_FILE: MSMg01no190_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:44 2005
         (286 letters)



>mm_chr14_89307428_89308113
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcagtattaactgttttatgtccaaacagattttcaacagttaatttctaccactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttgtcagtattaactgttttatgtccaaacagattttcaacagttaatttctaccactag 427

                                                                       
Query: 61  ctttttaaaatctttctactcctgtatttttttttaattttaaggggagggagaatgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttttaaaatctttctactcctgtatttttttttaattttaaggggagggagaatgagc 367

                                                                       
Query: 121 tagagattttgttgtaattacatgtttagacatactttgctcaaatattttattgctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tagagattttgttgtaattacatgtttagacatactttgctcaaatattttattgctgat 307

                                                                       
Query: 181 acagagaggtgattttctttaagtatttttatgaaatacctaatgttttcgtccatgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acagagaggtgattttctttaagtatttttatgaaatacctaatgttttcgtccatgaat 247

                                                         
Query: 241 aatgagttcttagacatgttatagagcaatatcaggtaataaatat 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aatgagttcttagacatgttatagagcaatatcaggtaataaatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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