BAC Information

Click to search

BAC

Clone NameMSMg01-191B15
Chromosome14 (Build37)
Map Location 33,742,526 - 33,742,809
singlet/doubletsinglet
Overlap geneE130203B14Rik
Upstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, EG665658
Downstream geneLrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191B15.T7 (MSMg01no191_b15.b1)MSMg01-191B15.TJ (MSMg01no191_b15.g1)
ACCAG381232AG381233
length705727
length of high quality
(start - end)
313 (46 - 358)279 (76 - 354)
definitionCHROMAT_FILE: MSMg01no191_b15.b1 PHD_FILE: MSMg01no191_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:35 2005CHROMAT_FILE: MSMg01no191_b15.g1 PHD_FILE: MSMg01no191_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTACGTAGACATCTCAGGCTACAGTAGGTTCACAGAGACCCACC
TACATCTACTTTCCAAGTTCTGGGATGAGAGGTGTGAGCCCTGACTGTTG
GGATAAGCTCAAAATGTGGCAGAAGTCAGTGTTCTGAAATCGGATGTTTT
CTAAGGGTCAGCTTCTGCTACATCATCGGTTCTCAATCTGTGGGTTGCAT
CCCCTTTGGGGCCGCATCTCAGGTCTCCCGAATATCAGATATTAACATCA
CAACTCACAACAGGAGCAAAATTACAGTTGTGAAATAGCAATGAAATAAT
TTTATGTTNGGTGACCTCNAACCANTGCCGAACTATATTAAAGAGTCACA
GCATCAGGAATGTTGAAAACCACTGAGATCACAAGGAGATGACAGTGGAG
ACAGGGGCAGTGCTGCAGTGCTCCCAATAACAAGACTCCTCCAGCCTCCA
CTTGACCCAACACTTAGAGGTCCCCAGAGATGGAGGGAGCCCAGAGCATT
CCTGGCTATTCCACACGGTGCCCTGGAGGTCACCCCAGCATTGTCTTATC
CGATACATACTTCCCTGTCACATCTCTGTCAGCTGTAAAAGTTCTGCCGC
CATTCCTCCCTCCTCTCCAAGGCGTTCATTTGTCCCTCCCTCTGCTCTGA
CTAAN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTGTGAGTATCACATGAGTCAAT
GCATCCAGTCCTTGAATGCCCTCCAATAAGAGGCATTGTACAAGTCCTAC
AATGCAGCTGAACTGAGGAAATAGAGGGCTTAGATGCACTGTTCACTGGA
ATACAGCTTATGATGGCAGCCTTCTTGTTTCTGAGAGCAAGGCTCCTGAG
CACCAACCACCATAGAGACCCTTGTGTGATTCAGTGACGGGGCATGTGAG
GATCGGGTTAAAAGTCTTATTCTTGGGTTATGTCTTGATTGAAGCAGATA
ATTTAACATGCNTTTTNNNACCGAACCCATCNTCTAGAGTGGCTGCCTGT
AAAATCACTTTGGAAAGAAACCAGGGATACTGCATTCCGGGGGGATGTGG
AAAGAAGATGAACAATTACATCAGCTTTTGGAGCAGTCACTGTGCAGCCA
GGAGAGGCTTCAAGTATGGGAGCCTCACTGAGACCATTATATATAATCAT
ATTTCTGTTCACACAATATGGCTTGTAAACTCTAGAGGCATCCATCTGTC
AATCTTTAAAATCTTGAGCCTATAAGCTTTATCCTTGGCCTTTCTATGCT
GGCTTCAACATGTTACTTATATAGATGGTACCTTGTGACTGTCCCAATAC
ATGTTAGCTTGGGTGTGTGGCCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_b15.g1 MSMg01no191_b15.g1 CHROMAT_FILE:
MSMg01no191_b15.g1 PHD_FILE: MSMg01no191_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:35 2005
         (279 letters)



>mm_chr14_33742334_33743012
          Length = 679

 Score =  453 bits (234), Expect = e-132
 Identities = 268/284 (94%), Gaps = 8/284 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgtgagtatcacatgagtcaatgcatccagtccttgaatgccctccaataagaggca 60
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 193 ctctgtgggtatcacatgagtcaatgcatccagtccttgaatgccatccaataagaggca 252

                                                                       
Query: 61  ttgtacaagtcctacaatgcagctgaactgaggaaa--------tagagggcttagatgc 112
           ||||| |||||||| | || |||||||||||| |||        ||||||||||||||||
Sbjct: 253 ttgtagaagtcctatattgtagctgaactgagaaaacacaggcatagagggcttagatgc 312

                                                                       
Query: 113 actgttcactggaatacagcttatgatggcagccttcttgtttctgagagcaaggctcct 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actgttcactggaatacagcttatgatggcagccttcttgtttctgagagcaaggctcct 372

                                                                       
Query: 173 gagcaccaaccaccatagagacccttgtgtgattcagtgacggggcatgtgaggatcggg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagcaccaaccaccatagagacccttgtgtgattcagtgacggggcatgtgaggatcggg 432

                                                       
Query: 233 ttaaaagtcttattcttgggttatgtcttgattgaagcagataa 276
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 433 ttaaaagtctcattcttgggttatgtcttgattgaagcagataa 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)