BAC Information

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BAC

Clone NameMSMg01-191D09
Chromosome14 (Build37)
Map Location 93,729,790 - 93,859,866
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191D09.T7 (MSMg01no191_d09.b1)MSMg01-191D09.TJ (MSMg01no191_d09.g1)
ACCAG381306AG381307
length840718
length of high quality
(start - end)
253 (104 - 356)290 (429 - 718)
definitionCHROMAT_FILE: MSMg01no191_d09.b1 PHD_FILE: MSMg01no191_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:44 2005CHROMAT_FILE: MSMg01no191_d09.g1 PHD_FILE: MSMg01no191_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,729,790 - 93,730,039)(93,859,577 - 93,859,866)
sequence
CTCTTTTTCTCCTTCCTTTTCCTTCCTTTGCAGTTCAAAAAAGTTTGTTN
NNNTCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACAATATACAGTTTTATGCAGAAGAGTCTTTTAGCTA
CTAATTAATTTATTCATTTAATGATTAATTCGTGAGTGCCTATTATCTAC
AAGAACATATTCCCACCCTGTGGAGAGCCATGAGTAATTGCCAATCATGA
GCCTCCGCTGTGCCTAACTGGTAAACAAGTAATGTGCGCAGGTGCAAGAG
TAAATTCGTGCCAAGTCACTGCCCATCCCGGGGCGTGGTGATGAGGCTCT
GGGAGAGCAGCCAATCAGATGTGGACTCTCTTCACTAAGGTGTATGTATA
TAAGCAGCGCCTTTTTTGGTTATGCCCAATACAATACCCCTGTTGAATCT
GGCGTAATAAAGTTGCTGCTTAATGATCCGAAAAAATCAAGCATGTTGTT
CTTGGTGGTGAGACAATACTTGTCGTGCTGAGATCCACCTCTATGCGAAT
GTATGGACGAAGAAATCATCTGACTCCCAGCATTTTTCTAACATCCGCAC
ACTGCGTACCTAACTCATTCTTCCTAACTCTGTGTACCCCAATCTGTAGT
TTAACCGCTTATATGATATCTACCAACCTATGCCCTCTTTTTATTACGGG
CTCACCCACCCCCAATTTCTCCTTGTAAATCATATACCAATTTTTGGGTA
CTTATCCTATTTTTTCCTCCATTATTATACCTCATTTTACTCGCAACAAC
TTTTATTTTATTAGTGGCTTTTCTATCCCCCCCTTTCTTG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATGTATCCTTGGAATAAATCCT
AGGAGACAGATGTACCATCAAGAACTTACTTTCAATGGCTACATTATGTA
AACCCACATGCTTGTGCTTTAATAGAGCCTCAGAATTTTGTGAAGTAAAA
TTTGTAAACTACTCTGCTGGAGCAATGTAAGCATTCTAAATAGGATATTA
TTGATTTCCATTGTAAAATTCATAACTCAGGTCTTTAAAAGTCTTGAAAT
AAGTATCTATTGACTTTGTTTCAGTAGAACAAAGATTTTTGGTGCATAAT
TTATTANGTTCTCCTGTAACTGATCCACTATAATAATTGTATTGTAGAAA
AGTCCACATGATAAGAAAAAAAAACAAGAGTGCAGTTTATGCATTTATAA
AGTGATTGCAAAAGAATATTATTGTATTGTACATAGAAATCTGAAAACAT
TTACAGCCTTACTTTTTGTCATTCCAACAATAGTACAAAGTCGAAATTTA
TTTTATTGAATGGTTTATCAATAGAACATATTAATGACTAGTGTTTTTCA
CATAAATTAAATACTTTTAATGCTGTACAATTATACCATATTGTACATTT
TACCACTTACTCAAATCTAAAATTAGCTGTCAAACATTAAATTTTCTGTG
TTTCTTACAACTCACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_d09.b1 MSMg01no191_d09.b1 CHROMAT_FILE:
MSMg01no191_d09.b1 PHD_FILE: MSMg01no191_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:44 2005
         (253 letters)



>mm_chr14_93729587_93730239
          Length = 653

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacaatatacagttttatgcagaagagtcttttagctactaattaatttattca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacaatatacagttttatgcagaagagtcttttagctactaattaatttattca 263

                                                                       
Query: 64  tttaatgattaattcgtgagtgcctattatctacaagaacatattcccaccctgtggaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaatgattaattcgtgagtgcctattatctacaagaacatattcccaccctgtggaga 323

                                                                       
Query: 124 gccatgagtaattgccaatcatgagcctccgctgtgcctaactggtaaacaagtaatgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccatgagtaattgccaatcatgagcctccgctgtgcctaactggtaaacaagtaatgtg 383

                                                                       
Query: 184 cgcaggtgcaagagtaaattcgtgccaagtcactgcccatcccggggcgtggtgatgagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgcaggtgcaagagtaaattcgtgccaagtcactgcccatcccggggcgtggtgatgagg 443

                     
Query: 244 ctctgggaga 253
           ||||||||||
Sbjct: 444 ctctgggaga 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no191_d09.g1 MSMg01no191_d09.g1 CHROMAT_FILE:
MSMg01no191_d09.g1 PHD_FILE: MSMg01no191_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:44 2005
         (290 letters)



>mm_chr14_93859377_93860066
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcagtttatgcatttataaagtgattgcaaaagaatattattgtattgtacatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agtgcagtttatgcatttataaagtgattgcaaaagaatattattgtattgtacatagaa 431

                                                                       
Query: 61  atctgaaaacatttacagccttactttttgtcattccaacaatagtacaaagtcgaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atctgaaaacatttacagccttactttttgtcattccaacaatagtacaaagtcgaaatt 371

                                                                       
Query: 121 tattttattgaatggtttatcaatagaacatattaatgactagtgtttttcacataaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tattttattgaatggtttatcaatagaacatattaatgactagtgtttttcacataaatt 311

                                                                       
Query: 181 aaatacttttaatgctgtacaattataccatattgtacattttaccacttactcaaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaatacttttaatgctgtacaattataccatattgtacattttaccacttactcaaatct 251

                                                             
Query: 241 aaaattagctgtcaaacattaaattttctgtgtttcttacaactcacaaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaattagctgtcaaacattaaattttctgtgtttcttacaactcacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)