BAC Information

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BAC

Clone NameMSMg01-191D10
Chromosome14 (Build37)
Map Location 82,177,107 - 82,177,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191D10.T7 (MSMg01no191_d10.b1)MSMg01-191D10.TJ (MSMg01no191_d10.g1)
ACCAG381308AG381309
length716722
length of high quality
(start - end)
315 (46 - 360)290 (433 - 722)
definitionCHROMAT_FILE: MSMg01no191_d10.b1 PHD_FILE: MSMg01no191_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:44 2005CHROMAT_FILE: MSMg01no191_d10.g1 PHD_FILE: MSMg01no191_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAAGCAGCTGGATATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGTGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATGCCAACTCAATTCTTCA
ATGAATTAGAAGGAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGTTAATTTCAGGAGGAACA
GAGGTCATATCAGAATTAACCCCAGACCCAAAGGAGGGGGATATGAGCAT
GAATGCAAAAAGACAGAAGTTTGTGTTGATATGTGGGAACTCTGAATGGA
GATGAAGTGGGTTAAAAAGCTTAAAATCACTAGAAGAATTTAAACCTTAA
TTCCATAAAATTAAAATAAAGTATTTGAATAGTTATTTGGTAAGGGACTA
TTCATGTAAACTGAAATATATTGGTTAAGTTGAAGAAAATATTAATAACA
ATAAGAATTNATAGTATCCCCCCCCCCCACCAGGTAACATCATTGGCAGT
TGCTAATAGACTGGAAGCATTTAAAATAAAACTACTCAGAATATCTCCAT
TTTCACAAGACATAATCAGAAAATGGAGTAATAAAGACAATACTTTTTAT
TGTTTACTGTTTGCATTTATCTTCAAGCTAAAAATTTAACAATCTCTATC
TATTGTATTTTGCTGGCAGCTAACAATGAATAATTTCACATGGTTAATGA
AATTTTTAGAGATCCATAGCAGAAATGATTAATTCTTTTGATTTCATTAT
TGGCAGAACAACTATAAACGTGGTGGTGATGTGACATCAGATGTTCACTC
GTGGCCAGAGTTTTGCACATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_d10.g1 MSMg01no191_d10.g1 CHROMAT_FILE:
MSMg01no191_d10.g1 PHD_FILE: MSMg01no191_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:44 2005
         (290 letters)



>mm_chr14_82176907_82177596
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactcagaatatctccattttcacaagacataatcagaaaatggagtaataaagacaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 tactcagaatatctccattttcacaagacataatcagaaaatggagtgataaagacaata 431

                                                                       
Query: 61  ctttttattgtttactgtttgcatttatcttcaagctaaaaatttaacaatctctatcta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctttttactgtttactgtttgcatttatcttcaagctaaaaatttaacaatctctatcta 371

                                                                       
Query: 121 ttgtattttgctggcagctaacaatgaataatttcacatggttaatgaaatttttagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttgtattttgctggcagctaacaatgaataatttcacatggttaatgaaatttttagaga 311

                                                                       
Query: 181 tccatagcagaaatgattaattcttttgatttcattattggcagaacaactataaacgtg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 310 tccatagcagaaatgattaattcttttgatttcgttattggcagaacaactataaacgtg 251

                                                             
Query: 241 gtggtgatgtgacatcagatgttcactcgtggccagagttttgcacatat 290
           |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 250 gtggtgatgtgacatcagatgttcactcgtggtcagagttttgcacatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)