BAC Information

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BAC

Clone NameMSMg01-192H24
Chromosome14 (Build37)
Map Location 100,482,783 - 100,483,177
singlet/doubletsinglet
Overlap geneKlf12
Upstream geneDis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192H24.T7 (MSMg01no192_h24.b1)MSMg01-192H24.TJ (MSMg01no192_h24.g1)
ACCAG382157AG382158
length1,1342,106
length of high quality
(start - end)
406 (34 - 439)---
definitionCHROMAT_FILE: MSMg01no192_h24.b1 PHD_FILE: MSMg01no192_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:56 2005CHROMAT_FILE: MSMg01no192_h24.g1 PHD_FILE: MSMg01no192_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGACATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCCA
TGGTGTTTTAATTTCAATTATCAGTCAATGTGTCTGCTAATATTAGCACT
TTCATCCACTATCTTTGCAAGTCTGTTATTATGTATCTTCAGCTTCTTAA
GTCTTTTCATGTTTGCCTTTACTTTTGTAGATTTATTTTAATCTATCTAT
ATGACGGGCCATTGTGTCAGTATACGTGAGGGTGATCCCTGGTTCCTCTA
GAAGAATGTACATGCTCTCTTCATCTGCGAGCCAACTCTCCAGGCTCATC
TATTTTTTTCCTTTTCTCTGTTACCTTGTAATTAGTTCACTATGTGTGTG
CTGGCTAGTTTGATGTCAAGCTGACATAAGCAAGAGTTCTATGATAAGAA
GGAGCCACCATAGAGACTGTGCCTTCATTATGCTGGCCTGTTTTTTTTTC
TCCCCCCCCATTATATTGATGAATGATTGATAAAAGAAGATCTCCCTGAC
AGGAGCTGGTGATGCAAACTATGTACAAACCTTGGATGGGCAGCCTCTAA
GTTAAAGTCGCTCCTCCATGGCATACACATCAATTCCTGCAGTGACCTCC
TGGGATGATGCACTATAAGATGAAATAAACTCCCTCCTCCAGAGTTGCTT
TTTGACTATAGTGCTTTATCACAGCAATAGAAAGTTAAACTAAGACAATG
TATTTTCCAGATCACCAATTTTCTCATTAGCTAGATCATATCTGCTTTAT
AATCTTAGGATTCGTTTTTATTTCTGTTGCGCTGATCTCCGCTTTAAGTT
AACATGGTTTGTCTTTTTTTCTCTTTTTTTTCTCTTTATATCCTCTTTTT
TTTTTTTTCTTCATCTTTTCTTTTCACTCTCTTTCTTTTTTTTACTTTTC
TTTTTCTTTTCTTTTCTTTTTCTCTTTTTTTATTCCTTTTTTCTTTTCTA
TCTTTTTTCTATTTTTCTTCTTATTTTTATTTTTTTTCTTCTTCCCTCTT
CCTTTCTTTTCTTCTCTTTCTTCTTTCTTTTTCCTTCTTCTTCTCTATGT
CCCTTTTCTTTATTATCCATTTTCTTTTTTCCTCTATTCTTTTTTTTACT
ATTTTTTTCTTTATTTTTTTTTTCTTTTTTTTTG
NGAGGGAAACACACCACCGCGCAGCCCCCCCCCGNCCNNNCCAGAAAAAC
ACAGGCGGAGACACCNTACCAGAGAGAGAACACGCCGGAACCCCCCCACA
GAGGAGAGGAGAGAGAGAGTCGGGTAGCCCGCCCCGCCACGGCCCAGACA
AAGAGCCCCCCAAAGAGTAGAGGACGAAGACAGAAGAAAAGCGCAAGAGA
GGGGAAGACACGGGCACGGCAAAACGGCGCGCAGACACGCAACGCAGANA
GCGGACAGGGACGACGGCAACACGGCGACGCGCACAGAGACGACACGGAG
AAAGCACACCAAGCAGAACACGCGAGGACGACACCCAGACGAAAAAGGGG
AGAAAGACCGCACACCAGAGACACGAAGGCCAGCAGACCACGACCACACA
ACCGAAGGCGAAGAAACAAAGATGAAAAAAGGCGACGCGCCGCGGAACGG
GAGGGAGGAAAAAGAAACCCCCCCCCCGCCCCGTGTNTTAAAGAGAAGAG
AGAAANGGAGAAAAAAGAGGGAAAAAAAAAGAATNGAAAAGAAGAAAAAG
GGGGAGCAAGAAGGAGAAGAGGAGAGAAACAAAAAGGGAAAAGAAAGAGG
AGAAAGAAGAAAAAGGAACACACGGACCTCACGAGCCAGAACGAGGCGAC
AACCGCCACACACCACACCCAGCGCAGAAGGAGGGGGCGGAGAAAANAAA
AGAAAAAGAGAGTATTTTTTTGTTTGACCAAGGAGGGCGGNGGGGACCCN
GGNNGGGGNNNNCCCCCCCCCCCCCCCCCCACACCCCCGGGAGTNTNNTG
AANNNNGGGGTNTTTTNTTNTNNNTTTTTTAAAANCTNANATAAAAAAAA
GGAAAACAACAGACACAGGAACCGCACACGACAAGACGAGACAGAGACAG
AGCCCACAGAAACACCACGAGACAACAGAAGCGACAAACAGCACGAAACG
CACCAAGCAGAACGCAGACAAAGCAAAGCAACACGCCCACAAGTGAACAC
AGCCAACCCCCCGACAACACAAAGACAAGACAAGAACCGACCAAAAAACC
AACAAGAAACACACACACAGCCACGCACGGCACGACAAGCAGCAGAACCG
AAACGACAAGAGACCACAAGACTACAACGAAAGAACAGAAAACAAGACGA
AGACACAAGACACACAGACAACCAGGAGAGAGACAAACAAGCACACAAAC
GAAGCAAAAGAACGGCAACCACGAGCGAGACGAGAGACCAGACGAACTGA
CAGACGAGCAACAAAGAGACGCAAAACACCACAAGACAGACACACAGNCC
ACAGAACAACCGCAGAAGACGCAACAGAACAAGACAACACGACACGAAAC
ACCAACACAACAAGAGAATCACAAACGCGAGCGGACAAGAGACGACCCGA
GACGCTCGCGAGAAACACCGTGCACCAGCAGACGACACACAACAACAACA
GAGGGAACACAAGCGAAGAACAGCAGCAAGCGAACAGAAACAAACAAACA
CACCAAAGCAAACGACCAACCGACATACATCAGCGCACGAGAAGACACAA
TAGCGCGACCACGAAGCCGACGACGGCCAACCAACCCAGCGCGACACGCG
CCGAACACAACGAAAGGAAGGAAGCCACAGGCAACGACAGGCACGAGCGA
CGAGCAGCAACAACAGACGAAGAAACGCCAACCCAGAAGAACGAACGAAC
ACAGCGAGACACAGACGCAACAACACCAAGACGCACAACAGACAAAANGC
ACGACCAGGCACACACACCAAGAACACGGACGGAAAGAAGCACGAACATG
CGAAGAGAGACAACGACCAGAGCGGCAACAGACACACGCGAGCCAGAGCG
GAACAAGACAACGACGACCAGAGCACGAAGACAAGGAGGAGAGACAGCGA
AAACGCACACGACACNAGCAAGAGCACCGCCAGAACACTAAGAGAGAGCA
CAACGAACAGACAGAGAACCAACCAACGACAACAACAAGACAAAGAACAA
NGAGCTCGACGCCAACAAGANATCAACAGGAGCCCGCAACGGAGCGAAAA
ACGAGCGCGCAAGGCACCAAGCGCGCAGACAGCCAAACCCGGACCGAAAA
CACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_h24.b1 MSMg01no192_h24.b1 CHROMAT_FILE:
MSMg01no192_h24.b1 PHD_FILE: MSMg01no192_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:56 2005
         (406 letters)



>mm_chr14_100482574_100483379
          Length = 806

 Score =  687 bits (355), Expect = 0.0
 Identities = 386/397 (97%), Gaps = 2/397 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattccatggtgttttaatttcaattatcagtcaatgtgtctgctaatattagcacttt 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattccatggtgttttaatttcaattatcagtcaatgtgtctgctaatattagcacttt 269

                                                                       
Query: 70  catccactatctttgcaagtctgttattatgtatcttcagcttcttaagtcttttcatgt 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 catccactatctttgcaagtctgttattatgtatcttcagcttcttaagtcttttcatgt 329

                                                                       
Query: 130 ttgcctttacttttgtagatttattttaatctatctatatgacgggccattgtgtcagta 189
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 330 ttgcctttacttttgtagatttattttaatctacctatatgacgggccattgtgtcagta 389

                                                                       
Query: 190 tacgtgagggtgatccctggttcctctagaagaatgtacatgctctcttcatctgcgagc 249
           | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 390 tgcgtgagggtgatccctggctcctctagaagagtgtacatgctctcttcatctgcgagc 449

                                                                       
Query: 250 caactctccaggctcatctatttttttccttttctctgttaccttgtaattagttcacta 309
           |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct: 450 caactctccaggctcatctattcttttccttttctctgataccgtgtaattagttcacta 509

                                                                       
Query: 310 tgtgtgtgctggctagtttgatgtcaagctgacataagcaagagttctatgataagaagg 369
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 510 tgtgtgtgctggctagtttgatgtcaagctgacataagcaagagttctatgagaagaagg 569

                                                
Query: 370 agccaccatagagactgtgccttcattatgctggcct 406
           |||||||||||||||||  ||||||||||||| ||||
Sbjct: 570 agccaccatagagactg--ccttcattatgctcgcct 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)