BAC Information

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BAC

Clone NameMSMg01-193L24
Chromosome14 (Build37)
Map Location 50,921,595 - 50,921,994
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733
Downstream geneOlfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193L24.T7 (MSMg01no193_l24.b1)MSMg01-193L24.TJ (MSMg01no193_l24.g1)
ACCAG382924AG382925
length742735
length of high quality
(start - end)		697 (46 - 742)659 (77 - 735)
definitionCHROMAT_FILE: MSMg01no193_l24.b1 PHD_FILE: MSMg01no193_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:21 2005CHROMAT_FILE: MSMg01no193_l24.g1 PHD_FILE: MSMg01no193_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTTTAATAGCTCAGTAGTACTCCATCATGTAAATGTACCA
CATTTTCTATATCCATTCCTTTATTGAGGGACATCTGGGTTCTTTCCAGC
TTCTGGCTGTTATAAATAAGGCTGCTATGAACATAGTGGAGCACGTGTCC
TTATTATCTGTTGGAACATCTTCTGGGTATATGCCCAGGAGAGGAATTGC
TAGATCCTCCAGGAGTACTATGTCCAATTTTCTGAGGAACCACCAAACTG
ATTTCCAGAGAACAGTTTTCAATTGTGTATATGTACCACCTTTCATTTTC
CATTCATTGGTTGAAGGACTTTAGGGTTGTTCCCATTCTCAAGATATTAT
GAATAAATCAGCAATGAGACAATATCTTTAGAATAGGATGTCAACTCCTT
TTGTCATTGCAAAGGAGTGTTATAGCTCGGTCATACGATATATTTATTTT
CAGCTAATAGAGAATTCTCAGTATTGATTCCCATAGTAGCTACATAAGTT
TTTAATCTTACCAACAATGAATGAATGTTTCCTTCATACACATGTCCTCC
AACATTTGTTTAAATTATTTTATTTGTTTTTAATATTCTCACTGAGGTAA
GATATAATCTTAAAGTTTTTTATTTGCGTTTCCCTAGTTCCTAAGGAAAT
ATATTTTCTTCTTCATAAAACTGTTCAGAACTCACCAATGGA

CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATTCTGACTCTGGATGAAGATA
TACCATTTTTATCTGCTCCAAATATCCCAACATTGAATATTTTTTATTAA
TAACCCTTTACTTCAGAGCCTGATCCTACTGGGCCTGTCAATCAACTTGT
CAGGAAATTTGGATTTTTCAAATTGTTTCTTTTCTTTATATAGTACCCTC
AACCCATTAAGCAGGAAGGTGTTCTTAATTATTTTAATTTTTGTTAGGGA
TGTGCTGGCTTAGTTATTATGTCGTTGTAGATTCTCCTCCAATAACCATG
ATGTCACTAGCATTGATTAATCAGCTAGATTTTCAGTACCAGGCAAGATT
TCCCTCCTGTTTAGTGGGTCTTAAGTCTAATTAGAGGTTAATTGCTTACT
GTCAAAGTATGCCTGCCAGTGCTGCACCTTCAGGTTATTGTGCCATGTTG
GTTGTTGCTGTGATTTATAGGCATCACAGCTGAATATGACTTCAGTTGGC
TTCCTCCTTTGGAAGCTTGTAGAGCCTTCTGGTATCATGATAGGTACCTT
CAGGTGGAAAGAGACATTTAGATTATCCCTTCTCAAGGGTCTCTAATCAG
TCAGTGACAGAATATTTGTTTTTGAACCCACTGCTTACATTGCAAATCTT
GGCTTATATATATTTGGACATTTATATGAACTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_l24.g1 MSMg01no193_l24.g1 CHROMAT_FILE:
MSMg01no193_l24.g1 PHD_FILE: MSMg01no193_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:21 2005
         (659 letters)



>mm_chr14_50921595_50922653
          Length = 1059

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattctgactctggatgaagatataccatttttatctgctccaaatatcccaacattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 400 caattctgactctggatgaagatataccatttttatctgctccaaatatcagaacattga 341

                                                                       
Query: 61  atattttttattaataaccctttacttcagagcctgatcctactgggcctgtcaatcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atattttttattaataaccctttacttcagagcctgatcctactgggcctgtcaatcaac 281

                                                                       
Query: 121 ttgtcaggaaatttggatttttcaaattgtttcttttctttatatagtaccctcaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttgtcaggaaatttggatttttcaaattgtttcttttctttatatagtaccctcaaccca 221

                                                                       
Query: 181 ttaagcaggaaggtgttcttaattattttaatttttgttagggatgtgctggcttagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttaagcaggaaggtgttcttaattattttaatttttgttagggatgtgctggcttagtta 161

                                                                       
Query: 241 ttatgtcgttgtagattctcctccaataaccatgatgtcactagcattgattaatcagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ttatgtcgttgtagattctcctccaataaccatgatgtcactagcattgattaatcagct 101

                                                                       
Query: 301 agattttcagtaccaggcaagatttccctcctgtttagtgggtcttaagtctaattagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agattttcagtaccaggcaagatttccctcctgtttagtgggtcttaagtctaattagag 41

                                                   
Query: 361 gttaattgcttactgtcaaagtatgcctgccagtgctgca 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  gttaattgcttactgtcaaagtatgcctgccagtgctgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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