BAC Information

Click to search

BAC

Clone NameMSMg01-195A21
Chromosome14 (Build37)
Map Location 117,261,918 - 117,262,204
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc5
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195A21.T7 (MSMg01no195_a21.b1)MSMg01-195A21.TJ (MSMg01no195_a21.g1)
ACCAG383733AG383734
length709715
length of high quality
(start - end)
318 (45 - 362)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no195_a21.b1 PHD_FILE: MSMg01no195_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:08 2005CHROMAT_FILE: MSMg01no195_a21.g1 PHD_FILE: MSMg01no195_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAATTGCAGAACAGCTCTTTGGTGATATGAATAAGAATGACCCC
AGAGACTCATCTATTTGAATACTTGTTCACCAAGAAGTGGAACTCTTTGA
TAGGATTGAAAAGATTAGGAGCTTTGGCTTTGTTGGAGGAAAGGTGTCAC
TAGGAGTAGGCTTTGAGGTTTCAAAAGCCCACACCAGACCCAGTCTCTCA
CTCTGGGTTGGAGGATCACATTATAACTCTCTGCTACTTTAGCACCACAC
CTGCCTACAGCCATGCCCTCTGTATGAAGAGAATGGACTACCGCTCTGAA
ACTGTAATAAAGGCTTTTACCACCCGCTCTCCATTGTAGTTGTTGCCTTG
GTCATAGTGTCCCTTCAAAGCAATAGAATGCTGGCTTAGACTTGTTTGTT
TATTTTTCTGACATTGCTTGTTCGCAGTGCTAAAGAAGTTACCAATATTG
TTTCTAATCCTCCACATTCACCACGACATTTATCTCTAACAGGAAGAGAG
GATCTTTTCAAATCCAATGTTTGTATTTGTATTTCCTTTTGGAGATACAG
TTATCCCTAGAGGCCCAGGCTGGCCTTGAACTCATGATACCTTTATTTCA
GATTCCCTTGTACTGGGACTCAGACATGAACCAAAGTGTTTAGNTAATGT
TTTTTCATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCATCTGAAGGCTGCTAGCAGA
ATACTCTCTTCCAGGCAGCTAGCACTTGGGTATTAAAGCCCACACCCACA
GTGACACACCTACTACAAGCAGGCCACACCTCCTAATAGTGCTGGCCTCT
GGCCCAAGCATGTATAAACCATCACAAAGCCTATGGAGGCCACTCTTAGT
CAAACCTCCCCAGGTGATAACATCCATTGACATATTAGGTCCTTATTTTC
TATTCATTAAAATTAATATCAATTTTATTGTTTTAAACTTCAAGATGTTT
ACTTTGTATTTAATTTCTTTTTTGCACACCCCCCCACACATATGGTAAGA
GGCTAGAGAAGAAACATGTACTCGGAAAGGTAAAATTGTGATCTCTCTGG
CAGAGAGAAAGCATCTGTCTACTTAGATTCTGTGCTTTTTGATAAGGAGA
AAAAAATAGTACATAAATATAATTATTATTCAATTTGACACATAGTATAA
TATCTATGCTGTATCTTAATAAGCATGGCCGCATTTATTACAGCTTAGCA
AGAGAAAATAAAAATTAGTTTTAGCAATTAACCTTATCCACATGTAAATG
AGATTAATTAGTAGTTTTCCCTTTCTAATCTTTTGGGGAAAGCAGATAAT
TGTAATTATACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_a21.g1 MSMg01no195_a21.g1 CHROMAT_FILE:
MSMg01no195_a21.g1 PHD_FILE: MSMg01no195_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:08 2005
         (288 letters)



>mm_chr14_117261532_117262219
          Length = 688

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcatctgaaggctgctagcagaatactctcttccaggcagctagcacttgggtattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgtcatctgaaggctgctagcagaatactctcttccaggcagctagcacttgggtattaa 614

                                                                       
Query: 61  agcccacacccacagtgacacacctactacaagcaggccacacctcctaatagtgctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agcccacacccacagtgacacacctactacaagcaggccacacctcctaatagtgctggc 554

                                                                       
Query: 121 ctctggcccaagcatgtataaaccatcacaaagcctatggaggccactcttagtcaaacc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctctggcccaagcatatataaaccatcacaaagcctatggaggccactcttagtcaaacc 494

                                                                       
Query: 181 tccccaggtgataacatccattgacatattaggtccttattttctattcattaaaattaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 493 tccccaggtgataacatccattgacatattaggtccttattttctattcattaaaagtaa 434

                                                          
Query: 241 tatcaattttattgttttaaacttcaagatgtttactttgtatttaa 287
           |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 433 tatcaattttattgttttaaacctcaagatgtttactttgtatttaa 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)