BAC Information

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BAC

Clone NameMSMg01-196D14
Chromosome14 (Build37)
Map Location 109,766,009 - 109,862,277
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196D14.T7 (MSMg01no196_d14.b1)MSMg01-196D14.TJ (MSMg01no196_d14.g1)
ACCAG384419AG384420
length741707
length of high quality
(start - end)		314 (57 - 370)615 (77 - 691)
definitionCHROMAT_FILE: MSMg01no196_d14.b1 PHD_FILE: MSMg01no196_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:42 2005CHROMAT_FILE: MSMg01no196_d14.g1 PHD_FILE: MSMg01no196_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,766,009 - 109,766,318)(109,861,663 - 109,862,277)
sequence
NNNNAATTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTGTTTAGCTCTGAGCCCTATTTTTTAAACATC
ACCAGTTTTACATATTACATACTATTGGATTTCTTCATGAGAAAATGCAT
TTAGACCATACATTTCAACCATTTGATGTGTTCCAATTTTTTTCTTTATG
CATATTCATCTTTATGTTCATCCTTTTCATTTTTATATTTTATATTAGGC
TTTCTTTGAATCTTCCAATTCAAAATCAATCTTTAGTCTTTGAGATGAAC
ATTTGTCTTTGTTTTGGAGGTGAAGAAAATCGATTCTTCCAAACAGCAGG
TATTTTTAGTTTTCTTTCCAAAACCGTTGACTGACACATTGTAAACTCAA
GGTCAATAAAAGATGTGTTTCCTTTATAAGATAGTACTATTGAAGAAACC
AGGTAATATGAACTACACGGTATACTTGATCTCTCTCTTTCTCTCTCTCT
CTTATTTATTTATGATCTTCATTCTAGTCATTATCCAACTTTGAATGATA
TGATTTTTTGATCACTTTGGAGAAATAATACAGCTGGGAACGCTCACCTG
CTTCCTGAGCAAGGAATATTTTTCCTTTTAGTTTTGCTTTTTATTCTCTA
AGATCTTCTTCTGCGTGATCACTTTTATATTTTAATTCCATATTTTTGTA
CTTTAAAAAGCTCACAAAAAATTTATTACTTCCAAAATTAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTGAAGAGCTAATCATGTAT
GTACATTTTTCCTTGTAACTACATATAAAAATTATTCTCTTACTCATAAT
GCCAAAGACAGTATTGCAGTATTTGAAATTATTGAAAAAATGCTAACGTA
TAGTGACAATCAGTGACACATCATAGTGAAGTTTCCAGGTAGGAAGTTAA
AAGCACAGATTAATGGACACTGAAACGGGGAGTTATGAGACTATTTCACT
AAATCCAATATAAGAGACCAAAATCAAAGACTTAAGAACAATGTTTTTGC
TCTTGCTGTTGAAAATGCTATCATTGTCTCACAAACATTCAATTAACAGC
ACGGAGGCAGCAGCTGAGGGCTAAGACTTGAAATAGAAACTAGAGTTGTA
TGTCTTCAGTGTAATAAGTCCTTCAGAGTTTAAAGATAATATTATAAAGT
AGCATACTTAACATAAAACTTTTTAAAATGCAGGAAGAGTCATTCTGTTG
ATCTGATTTATTTAAAGCATTTTTTTCTCCTTGAGATGTTAAAAATATAG
ACTCTAGATTTTATATAATCATTCATTCTAGACATGTTGAGACACCATGG
CTGTTCCCATCCACCTACTGCACTCAACACTGGTCTCATAACCACTGTTC
TCTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_d14.b1 MSMg01no196_d14.b1 CHROMAT_FILE:
MSMg01no196_d14.b1 PHD_FILE: MSMg01no196_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:42 2005
         (314 letters)



>mm_chr14_109765805_109766518
          Length = 714

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttagctctgagccctattttttaaacatcaccagttttacatattacat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagttctgagccctattttttaaacatcaccagttttacatattacat 264

                                                                       
Query: 65  actattggatttcttcatgagaaaatgcatttagaccatacatttcaaccatttgatgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actattggatttcttcatgagaaaatgcatttagaccatacatttcaaccatttgatgtg 324

                                                                       
Query: 125 ttccaatttttttctttatgcatattcatctttatgttcatccttttcatttttatattt 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccaatttttttccttatgcatattcatctttatgttcatccttttcatttttatattt 384

                                                                       
Query: 185 tatattaggctttctttgaatcttccaattcaaaatcaatctttagtctttgagatgaac 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatattaggccttctttgaatcttccaattcaaaatcaatctttagtctttgagatgaac 444

                                                                       
Query: 245 atttgtctttgttttggaggtgaagaaaatcgattcttccaaacagcaggtatttttagt 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 atttgtctttgttttggaggtgaagaaaatctattcttccaaacagcaggtatttttagt 504

                     
Query: 305 tttctttcca 314
           ||||||||||
Sbjct: 505 tttctttcca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_d14.g1 MSMg01no196_d14.g1 CHROMAT_FILE:
MSMg01no196_d14.g1 PHD_FILE: MSMg01no196_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:42 2005
         (615 letters)



>mm_chr14_109861463_109862477
          Length = 1015

 Score = 1181 bits (611), Expect = 0.0
 Identities = 614/615 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattctgaagagctaatcatgtatgtacatttttccttgtaactacatataaaaattatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cattctgaagagctaatcatgtatgtacatttttccttgtaactacatataaaaattatt 756

                                                                       
Query: 61  ctcttactcataatgccaaagacagtattgcagtatttgaaattattgaaaaaatgctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ctcttactcataatgccaaagacagtattgcagtatttgaaattattgaaaaaatgctaa 696

                                                                       
Query: 121 cgtatagtgacaatcagtgacacatcatagtgaagtttccaggtaggaagttaaaagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cgtatagtgacaatcagtgacacatcatagtgaagtttccaggtaggaagttaaaagcac 636

                                                                       
Query: 181 agattaatggacactgaaacggggagttatgagactatttcactaaatccaatataagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agattaatggacactgaaacggggagttatgagactatttcactaaatccaatataagag 576

                                                                       
Query: 241 accaaaatcaaagacttaagaacaatgtttttgctcttgctgttgaaaatgctatcattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 accaaaatcaaagacttaagaacaatgtttttgctcttgctgttgaaaatgctatcattg 516

                                                                       
Query: 301 tctcacaaacattcaattaacagcacggaggcagcagctgagggctaagacttgaaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctcacaaacattcaattaacagcacggaggcagcagctgagggctaagacttgaaatag 456

                                                                       
Query: 361 aaactagagttgtatgtcttcagtgtaataagtccttcagagtttaaagataatattata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaactagagttgtatgtcttcagtgtaataagtccttcagagtttaaagataatattata 396

                                                                       
Query: 421 aagtagcatacttaacataaaactttttaaaatgcaggaagagtcattctgttgatctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aagtagcatacttaacataaaactttttaaaatgcaggaagagtcattctgttgatctga 336

                                                                       
Query: 481 tttatttaaagcatttttttctccttgagatgttaaaaatatagactctagattttatat 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttattttaagcatttttttctccttgagatgttaaaaatatagactctagattttatat 276

                                                                       
Query: 541 aatcattcattctagacatgttgagacaccatggctgttcccatccacctactgcactca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatcattcattctagacatgttgagacaccatggctgttcccatccacctactgcactca 216

                          
Query: 601 acactggtctcataa 615
           |||||||||||||||
Sbjct: 215 acactggtctcataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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