BAC Information

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BAC

Clone NameMSMg01-196G08
Chromosome14 (Build37)
Map Location 28,748,454 - 28,749,038
singlet/doubletsinglet
Overlap geneErc2
Upstream geneAppl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196G08.T7 (MSMg01no196_g08.b1)MSMg01-196G08.TJ (MSMg01no196_g08.g1)
ACCAG384525AG384526
length762742
length of high quality
(start - end)
454 (46 - 499)606 (77 - 682)
definitionCHROMAT_FILE: MSMg01no196_g08.b1 PHD_FILE: MSMg01no196_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:56 2005CHROMAT_FILE: MSMg01no196_g08.g1 PHD_FILE: MSMg01no196_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTTCAGAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGGATTTTTGCA
TCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATC
TTTCTGTGGTTTAGGTATCACAGTAATAGTGGCTTCATAAAATGAGTTGG
GTAGAGTACTTTCTACCCCTATCTTGTGAAAAAGTTTGTGCAGAACTGGA
ATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGG
TCCTGGGCTTTTTTTGGTTGGTATACTACCTATAACTGCTTCTATTTCTT
TAGGTCCATATTCCACCGTTTTTTTTTTTCCCTTTTAATCTTGATCCTAC
TTCTGTTACTCCTCTACCCGCCTTTTTTTTTGTACCTATTTCTCCCTAAT
ATTAACTTTCCTATTTTCCCTATTTCCCTTTTGTTTCATTCTCTCCCTTC
CCCTAGTTTTCTTTTTCTGCATCATCTCTACCCTCCCTGCCCTCATTTTT
TTCCTTCTATCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGATGAGGCCCATATTCTTGTTC
ACCCTGTCCCTGGCTTGGAAAGCCATCCCTTTTCCTAGACATTTTCCCCT
ACCATCAGGGCTCAATTGTTATCTTTGCATCCAAGTTTATCTCAACAGCG
GAGTGTTTCCCCATGGCACCCAGCTTGGATTGGTGAGTTCCTGACCTCTT
CCCTCATCCATCATGCCACCTTTCTGTTTCCTTCTGTTGTTCTGTGCCCT
CTTGGGAACCAGTTTTATTTCTAAATATCATCAACTAGTAGTGAGGAGTT
TATTGAGAGTTAAGTACACAGCAGGCTTTGTGCTGAGTATTGTACCTGCA
GGGTATCACTGGCTCATCAAGGCAAGCATTCCTTTCATCCCTGTTTTAGA
AGACAGGCATTCAAAACACAAGAAAATCAAGAAGAGGGAAGACCAATGGG
TGGGTACTTCATTCCTCCTTAGAAAAGGGAACAAAATACCCATGAAAGGA
GTTACAGAGACAAAGTTTGGAACTAAGACGAAAGTTTGGAGTATGGACTA
TTCAGAGACTACCCCACCCAGGGATCCATCCCAAAATCAGCCACCAAACC
CAGACACTATTGCATATGCCACAAAGATTTTGCTGAAGGGACCCTGTTAT
AGCTGTCTCATATGAGGGTTTGCTAGCGACTGGTCAATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_g08.g1 MSMg01no196_g08.g1 CHROMAT_FILE:
MSMg01no196_g08.g1 PHD_FILE: MSMg01no196_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:56 2005
         (606 letters)



>mm_chr14_28748454_28749459
          Length = 1006

 Score = 1116 bits (577), Expect = 0.0
 Identities = 583/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatgaggcccatattcttgttcaccctgtccctggcttggaaagccatcccttttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttgatgaggcccatattcttgttcaccctgtccctggcttggaaagccatcccttttcct 526

                                                                       
Query: 61  agacattttcccctaccatcagggctcaattgttatctttgcatccaagtttatctcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agacattttcccctaccatcagggctcaattgttatctttgcatccaagtttatctcaac 466

                                                                       
Query: 121 agcggagtgtttccccatggcacccagcttggattggtgagttcctgacctcttccctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 465 agcggagtgtttccccatggcacccagcttggattggtgagttcctgacttcttccctca 406

                                                                       
Query: 181 tccatcatgccacctttctgtttccttctgttgttctgtgccctcttgggaaccagtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tccatcatgccacctttctgtttccttctgttgttctgtgccctcttgggaaccagtttt 346

                                                                       
Query: 241 atttctaaatatcatcaactagtagtgaggagtttattgagagttaagtacacagcaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atttctaaatatcatcaactagtagtgaggagtttattgagagttaagtacacagcaggc 286

                                                                       
Query: 301 tttgtgctgagtattgtacctgcagggtatcactggctcatcaaggcaagcattcctttc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttgtgctgagtattgtacatgcagggtatcactggctcatcaaggcaagcattcctttc 226

                                                                       
Query: 361 atccctgttttagaagacaggcattcaaaacacaagaaaatcaagaagagggaagaccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atccctgttttagaagacaggcattcaaaacacaagaaaatcaagaagagggaagaccaa 166

                                                                       
Query: 421 tgggtgggtacttcattcctccttagaaaagggaacaaaatacccatgaaaggagttaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgggtgggtacttcattcctccttagaaaagggaacaaaatacccatgaaaggagttaca 106

                                                                       
Query: 481 gagacaaagtttggaactaagacgaaagtttggagtatggactattcagagactacccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gagacaaagtttggaactaagacgaaagtttggagtatggactattcagagactacccca 46

                                                        
Query: 541 cccagggatccatcccaaaatcagccaccaaacccagacactatt 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  cccagggatccatcccaaaatcagccaccaaacccagacactatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)