BAC Information

Click to search

BAC

Clone NameMSMg01-196I18
Chromosome14 (Build37)
Map Location 85,673,879 - 85,674,493
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603, LOC100043301, EG629815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196I18.T7 (MSMg01no196_i18.b1)MSMg01-196I18.TJ (MSMg01no196_i18.g1)
ACCAG384624AG384625
length754755
length of high quality
(start - end)
621 (46 - 666)617 (77 - 693)
definitionCHROMAT_FILE: MSMg01no196_i18.b1 PHD_FILE: MSMg01no196_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:08 2005CHROMAT_FILE: MSMg01no196_i18.g1 PHD_FILE: MSMg01no196_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGGGAATACGCCCAAGAATGGTATAACAGGACCATGTGTATTC
AGTGTTTTGGGAATTTTCACCCTGACTTCCACAGGGACTGCTCCATCACT
CCCACTAGCACGAAGTACGTATTACCTTTTCCCGGATACACAACAGCATT
TTTCATCATTTGTTTTTGGGTCTTAGCAATTCTGACTGGACTTTAAATTT
ACATTTCACTGAAGGCTAAAGACATTTAGCAATTTTAAGTGTTTCTTAGT
CATCTCTGTTTTAACTTTTGAGAACTCTGTTTAGTTCCATGTCCCACTCT
TAAATGAATTGCTTGCTTTCTTGATGTCTGTTTTATTTTAGTTCTTTACA
TATTCTAGATGTCAACTCTCTGTCCACTGTATAGCTAGGAAAGACATCTT
CCCATTTTGTAGACTTTCTCATCACTTGAATGACAGTGTCATTTGCTGTA
GAGAAAGTTTTGATGTCATGTCTCTTACTAATTGCTGGCCATCATGCATG
AGTGACAGGGGTCCTGTTTCAAAAGCTCTTTCCTGTGTCAATGAGTTCCA
ATGTATTTCTTGTTTGTCTATCAAATGATATTAGATATTATGTTTAAGTA
CAATGACCCATATTCCCTATTACGACATCTATCCAAGAATATATGGGCAG
CACATATTAGCTTTGATCGGATAATAGAACACCTCCCGTTTGCTACCAAA
AGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTCGATGTTTACACTGTGGA
AAGATGTTGGAGTTGCAAAATTAAGTGTCTGAAGTAATATTTTAGCCACT
AGTCTTAACTCATAGTTTTTCTTCTTAGTTATTGCTAGAGCTTTTAACAA
ATATATTTTGAAATATGCATAGTAATACTAATTTCACCTGGATGAATATC
TTCGCAACTTTATTTACTGCTTACTACTTAAAAATACTTTAGTGTGGCAA
TTCCCCTATATATCTTCTTGTAATTAAGCATAATACTAAAAAATTCATCA
GTTTTGTGGCATATATCAACAATTTTTTTTTCATACTGAAAGCTAATCTA
ACATTTATTGCCTAGGCATACTTCATTGTATTTCTTTATTTTCTATTGTT
TATCTCTGGCAAGTTTATATTAAATTTGTTATATGTTTTGACCTTTTAAA
ATAACACTGCTGTTAGAAATTGACACATTCTGTTTGAACCCATGTTTATA
ACTGTCTTGAGAATATACTTGCAAGTAGAATTGTTAGCTTGTATGACAAT
TGTTTGCTTAGAAAACCAAAGAATTCCAAAAACATTTCTTTTCTTTTTTT
TCAAATGGCTCTGCCATTTTGCATTCTGAACATGCTATGTAGGAGTGCTA
ATTTCTTGACATTCTCATAGACACAATTCTTTAACCTTTCCATTTTTTTT
TACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_i18.g1 MSMg01no196_i18.g1 CHROMAT_FILE:
MSMg01no196_i18.g1 PHD_FILE: MSMg01no196_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:08 2005
         (617 letters)



>mm_chr14_85673679_85674693
          Length = 1015

 Score = 1131 bits (585), Expect = 0.0
 Identities = 609/617 (98%), Gaps = 2/617 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgttcgatgtttacactgtggaaagatgttggagttgcaaaattaagtgtctgaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 attgttcgatgtttacactgtggaaagatgttggagttgcaaaattaagtgtctgaagta 756

                                                                       
Query: 61  atattttagccactagtcttaactcatagtttttcttcttagttattgctagagctttta 120
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 755 atattttagccactagacttaactcatagtttttcttgttagttattgctagagctttta 696

                                                                       
Query: 121 acaaatatattttgaaatatgcatagtaatactaatttcacctggatgaatatcttcgca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 695 acaaatatattttgaaatatgcatagtaatactaatttcacctggatgaatatctttgca 636

                                                                       
Query: 181 actttatttactgcttactacttaaaaatactttagtgtggcaattcccctatatatctt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 635 actttatttactgcttactacttaaaaatactttagtgtagcaattcccctatatatctt 576

                                                                       
Query: 241 cttgtaattaagcataatactaaaaaattcatcagttttgtggcatatatcaacaatttt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 575 cttgtaattaagcataatactaaaaaattcatcagttttgtggcatatatcaacaa-ttt 517

                                                                       
Query: 301 tttttcatactgaaagctaatctaacatttattgcctaggcatacttcattgtatttctt 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 516 tttttcatactgaaagctaatctaacatttattggctaggcatacttcattgtatttctt 457

                                                                       
Query: 361 tattttctattgtttatctctggcaagtttatattaaatttgttatatgttttgaccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tattttctattgtttatctctggcaagtttatattaaatttgttatatgttttgaccttt 397

                                                                       
Query: 421 taaaataacactgctgttagaaattgacacattctgtttgaacccatgtttataactgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taaaataacactgctgttagaaattgacacattctgtttgaacccatgtttataactgtc 337

                                                                       
Query: 481 ttgagaatatacttgcaagtagaattgttagcttgtatgacaattgtttgcttagaaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 336 ttgagaatatacttgcaagtagaattgttagcttgtatgacaattgtttgcttagaaaat 277

                                                                       
Query: 541 caaagaattccaaaaacatttcttttcttttttttcaaatggctctgccattttgcattc 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 276 caaagaattccaaaaacatttcttttc-tttttttcaaatggctctgccattttgcattc 218

                            
Query: 601 tgaacatgctatgtagg 617
           |||||||||||||||||
Sbjct: 217 tgaacatgctatgtagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1015
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1005
Effective search space:   610035
Effective search space used:   610035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)