BAC Information

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BAC

Clone NameMSMg01-197D24
Chromosome14 (Build37)
Map Location 62,337,350 - 62,337,649
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
Downstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197D24.T7 (MSMg01no197_d24.b1)MSMg01-197D24.TJ (MSMg01no197_d24.g1)
ACCAG385061AG385062
length748710
length of high quality
(start - end)
318 (45 - 362)342 (57 - 398)
definitionCHROMAT_FILE: MSMg01no197_d24.b1 PHD_FILE: MSMg01no197_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:04 2005CHROMAT_FILE: MSMg01no197_d24.g1 PHD_FILE: MSMg01no197_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGGCAACCTGGGATATGTAAGACTCTGTCTCTAAAACCAAAACT
GAAACCAGAAGTCACTTAGTGGTTCACTATGAGCAACACACACACACACA
CACACACACACACACACACACACACACACACACACACACTGAAACACTAC
AAACATCCTGACCATTGATATTGTCATCATTTATACAGCCATTCAGTAAA
CATGTATGAAAGAATTCACTATTATAGATCCAGACACAGAATGAGAATGC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACTAGCATATTTGTATGCGCACCCCTACGCTCCATAAAGCCCCC
TCCCCCTTATGCTCATTCCCCACCACACACAGTCCTGCCTGGTGTAGAGG
AGGCAGCTTGCTGTTAGAGGAGGAGTGGCCTTAGCTCTGCCATTTATGAG
CAGTGGGGCACCAGCAAGCTCCTCAGCCTCTCTTTTATCCCCTCAGCTGC
GGAGTCTTGATGATGATACTTTATGTATCGTCTTGAGCTTTAAAGGTATA
TTATTTTCCTTGGCTTTGCTATGATGGTTTACAAAGCTTATTTTAAGTCA
GAGACCCAGGCAAAGAAATATTGACCTTTTGAGAACGAATTTTGATATGA
GTATTAGGAGAATACTTGGCGCTCCCCCCCCCCCCCCCGGCGATTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTCCTGTTACATCTGATGAGATCGGTTTGGGGGTCACTTCATA
ATTCACCTTTGATGAGATGCCAGTTCTTGCCAATTGAACTGCATAGCTTC
AACAAAATTCTGAAATCCAAGTGGGGACCTGATTCTAAACTTCATATGGA
AATGCATAAGACCTACAACAGCTAAACCAACTTCAACAGCAGGAAAATGA
TGGGGGAGTCAAGAACCCTAGATTTCAGATCTTATACAAAGCTACAGTGA
CGTGCCGTTGGCAAAGGGAGGCAGGTCACTGTGGAAAACAGAGAGGCTAG
AAATAGATCAAATGCATGAACAATTGATTTTTCACAAAAGTACAAAGACC
ACCCGGAGGAATGTTGGCAGACTTTTCTACATACGGTGTTGGAATATCCA
CATTTTTTTTAAAAAGGAAAAAAACTGTGATCCATACTTTAAGCTGTGTG
AGGATACTAGCTCAAACGGAGCAGCTCTAAATGCAGTCATAAAGCTATTG
ACACGTTTACTGAGATATTAGATCAGACAGGCATTTCTTCGACGTAATGC
CACATGTATGGCTCGCAGAGGAAAACTCAGCCATCTAGAGTTCAATGGTC
TCCAGGAGCAGAAGTGAGGTTCTCTTGTCTGGGATGCTGAAAACTGGTCC
CTGAGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_d24.b1 MSMg01no197_d24.b1 CHROMAT_FILE:
MSMg01no197_d24.b1 PHD_FILE: MSMg01no197_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:04 2005
         (318 letters)



>mm_chr14_62337136_62337853
          Length = 718

 Score =  549 bits (284), Expect = e-161
 Identities = 299/310 (96%), Gaps = 10/310 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagggcaacctgggatatgtaagactctgtctctaaaaccaaaactgaaaccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattcaagggcaacctgggatatgtaagactctgtctctaaaaccaaaactgaaaccag 274

                                                                       
Query: 65  aagtcacttagtggttcactatgagcaacacacacacacacacacacacacacacacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aagtcacttagtggttcactatgagcaacacacacacacacacacacacacacacacaca 334

                                                                       
Query: 125 cacacacacacacacacacactgaaacactacaaacatcctgaccattgatattgtcatc 184
           |||||||||||          |||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cacacacacac----------tgaaacactacaaacatcctgaccattgatattgtcatc 384

                                                                       
Query: 185 atttatacagccattcagtaaacatgtatgaaagaattcactattatagatccagacaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttatacagccattcagtaaacatgtatgaaagaattcactattatagatccagacaca 444

                                                                       
Query: 245 gaatgagaatgcacacacacacacacacacacacacacacacacacacacacacacacac 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gaatgagaatgcacacacacacacacacacatacacacacacacacacacacacacacac 504

                     
Query: 305 acacacacac 314
           ||||||||||
Sbjct: 505 acacacacac 514



 Score = 99.3 bits (51), Expect = 3e-25
 Identities = 54/55 (98%)
 Strand = Plus / Plus

                                                                  
Query: 92  acacacacacacacacacacacacacacacacacacacacacacacacacacact 146
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acacacacatacacacacacacacacacacacacacacacacacacacacacact 521



 Score = 97.4 bits (50), Expect = 1e-24
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                 
Query: 92  acacacacacacacacacacacacacacacacacacacacacacacacacacac 145
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acacacacacacatacacacacacacacacacacacacacacacacacacacac 516



 Score = 97.4 bits (50), Expect = 1e-24
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                 
Query: 92  acacacacacacacacacacacacacacacacacacacacacacacacacacac 145
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acacacacacatacacacacacacacacacacacacacacacacacacacacac 518



 Score = 87.7 bits (45), Expect = 9e-22
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 271 acacacacacacacacacacacacacacacacacacacacacact 315
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acacacacacacacacacacacacacacacacacacacacacact 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 258
Number of extensions: 91
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 26
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)