BAC Information

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BAC

Clone NameMSMg01-198D13
Chromosome14 (Build37)
Map Location 24,565,914 - 24,566,467
singlet/doubletsinglet
Overlap geneKcnma1
Upstream gene1700112E06Rik, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198D13.T7 (MSMg01no198_d13.b1)MSMg01-198D13.TJ (MSMg01no198_d13.g1)
ACCAG385641AG385642
length753741
length of high quality
(start - end)
370 (384 - 753)554 (77 - 630)
definitionCHROMAT_FILE: MSMg01no198_d13.b1 PHD_FILE: MSMg01no198_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:23 2005CHROMAT_FILE: MSMg01no198_d13.g1 PHD_FILE: MSMg01no198_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGGGTCCACTTGCCTCCCGACTGAGCCCTGAATATGGCTTGGA
AAAAGGCCAAAGCTGACAAATGGCATTCAGTAGGTTGGAACATTAGGAGG
GAAGGGACAAGGGTTGTTGGGCCACTGCCTCTTCAAACCCTCAGGTGAGG
GTCTAACCACTTCAAACTTAGAAGCCAGTTCTTACATAAAGCAATGAGAA
TAGCATTTATAGTAGCATGATTGCATGTTCTTGTCATCCCAGCACAGAGA
TAGGAGGATCCCTGGACTTGCTAAACTGGTGAGGCCTAGGTCCAAGAGAG
AAACCTTGTCTCATAATCCAAGTACATATTGAAGAGTAAGAGCTCAGATT
GATGCTTGGGTTCTACATGCTCACTCATCCTCATACATGCATCTGTACCT
GAACACACACACAAACACACACATATACTCATACACATATATACACATAC
ACAAACACATACATACACATAGATATGCAAACACACAAACACACACACTC
ACACATATCACAAATACACACAAACACACATATACACACATACACAAACA
CATTTACACACATACATACAAACATACATACACATACACACACATACACA
CACTCACACATATACACCAACACATACACTCACACACATATACACAAACA
CACACATATATACACATATGCACACATATACACAAATGCATACACTCACA
CAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGTTAACCATTACCAAATGAGAT
GCCCTTCAGACTGGGGGACAAGAACACAACAAATGACCGGAAGTACAGCT
GCAAGGCACTTTAATAAGAAGGGAGGGAAGGAGAGTCCAAGATTAGTAAC
CAACATGCTTCTCTCATCTAAATTGACTTTCAGAGTGAAGGGTAAGAGCT
GAGGGGGAATTGATTTGGATGTGCTAAGTAGCCGGCATGGTTTTGTTTCA
CGGTGGTGCAAGCACACTTGACTCTTGCATGACTGCTCTGGAAATTGCTC
AGTGGAGCAGCATCACCTGGAGCTGCCCTGAGTCTGTGAAGTAACAGATT
CAATAAGAAAAGCTGGTTAGCACTCTACTGTTCTACAGCTTCCACTGTTT
TTCCTTTGCACCCCCACTTTGCCTTTCTTGCCCCAGTGTCATAGAAAACA
TCCCTGCCCTGGGAGATTGTAGCGTACATCTGATGTCGGCAGTCCAGGAA
CATGCCCAGTGGGTCCACAGGTGTGTCTGTGTATGGAGTCAGATGTCACC
AGGAAGTCATGGAGGAGGAGGTAGTTGAAAAAGTAGAACCAAGTAGGGGA
TGGGGATCCTTTATCCATTCATTGAGAATTATTTACTGAATGCTGACTGC
GTGGCCCATGTTGTTTAAGCTGTGAATATAGAGCTGCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_d13.g1 MSMg01no198_d13.g1 CHROMAT_FILE:
MSMg01no198_d13.g1 PHD_FILE: MSMg01no198_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:23 2005
         (554 letters)



>mm_chr14_24565714_24566667
          Length = 954

 Score = 1048 bits (542), Expect = 0.0
 Identities = 551/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagttaaccattaccaaatgagatgcccttcagactgggggacaagaacacaacaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tagttaaccattaccaaatgagatgcccttcagactgggggacaagaacacaacaaatga 695

                                                                       
Query: 61  ccggaagtacagctgcaaggcactttaataagaagggagggaaggagagtccaagattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ccggaagtacagctgcaaggcactttaataagaagggagggaaggagagtccaagattag 635

                                                                       
Query: 121 taaccaacatgcttctctcatctaaattgactttcagagtgaagggtaagagctgagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 taaccaacatgcttctctcatctaaattgactttcagagtgaagggtaagagctgagggg 575

                                                                       
Query: 181 gaattgatttggatgtgctaagtagccggcatggttttgtttcacggtggtgcaagcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattgatttggatgtgctaagtagccggcatggttttgtttcacggtggtgcaagcaca 515

                                                                       
Query: 241 cttgactcttgcatgactgctctggaaattgctcagtggagcagcatcacctggagctgc 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 514 cttgactcttgcatgactgctctggaagttgctcagtggagcagcatcacctggagctgc 455

                                                                       
Query: 301 cctgagtctgtgaagtaacagattcaataagaaaagctggttagcactctactgttctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cctgagtctgtgaagtaacagattcaataagaaaagctggttagcactctactgttctac 395

                                                                       
Query: 361 agcttccactgtttttcctttgcacccccactttgcctttcttgccccagtgtcatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agcttccactgtttttcctttgcacccccactttgcctttcttgccccagtgtcatagaa 335

                                                                       
Query: 421 aacatccctgccctgggagattgtagcgtacatctgatgtcggcagtccaggaacatgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 334 aacatccctgccctgggagattgtagcgtacatctgatgtcggcagtccaggaacgtgcc 275

                                                                       
Query: 481 cagtgggtccacaggtgtgtctgtgtatggagtcagatgtcaccaggaagtcatggagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagtgggtccacaggtgtgtctgtgtatggagtcagatgtcaccaggaagtcatggagga 215

                         
Query: 541 ggaggtagttgaaa 554
           |||||| |||||||
Sbjct: 214 ggaggtggttgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)