BAC Information

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BAC

Clone NameMSMg01-198E01
Chromosome14 (Build37)
Map Location 86,866,877 - 86,867,500
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603, LOC100043301, EG629815, LOC100043306, LOC100043778
Downstream geneLOC100043310, LOC100043311, Diap3, EG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198E01.T7 (MSMg01no198_e01.b1)MSMg01-198E01.TJ (MSMg01no198_e01.g1)
ACCAG385662AG385663
length763701
length of high quality
(start - end)
265 (55 - 319)625 (77 - 701)
definitionCHROMAT_FILE: MSMg01no198_e01.b1 PHD_FILE: MSMg01no198_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:25 2005CHROMAT_FILE: MSMg01no198_e01.g1 PHD_FILE: MSMg01no198_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAACTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTATTGGATTTGGTTTTGTACAGGTAAGAGATATGGGAT
GTGGAAAAGAGGCTGTTCTTGACACCCTTGCAAAGATTATGTGGTTGCAG
ATTTGTGTATTTATTTCTATTCTGTTCATCTATGCGTCCATTTTTTTTCT
ATTATGGCTCTCTACTATACATTGAGATTAGGTACCATGGTACCTAGTGC
TTTGTTCATTCTGCCTGGGCTTTTTTTTCTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTCTCACCCCCTTTTTTATCACCANCTATACT
CATAAAAAANAATATTTTTTTTTTTTTCCCCCCCCCCCCCCCCGAAAAAT
NTTTTGTTTGTTCGTTTGCCCCGGCCCCCAAAAAAAAAAAAAATATTTAT
CACTAAATTGTTGTTCCTTCTTATTTGTTAATACTTTATTTTTACTATTA
TTTTTTTTCTCTCTTTATTTTTTCTTTCCACCCCCTTATTTCTCCCTATC
TTCTTTGTCCTCCCCCACTTTTTTCTTGCCCCCTCGCCACTTATAACCAC
CTTCCTATCTTCCTCCTTTCTTCTCTGTTCTCTCTATTTTTTTAAAACTC
CTCCACCTATTACCTTTTTCTTGTATCCAACTTATCCCACCCTTCTTTTT
TCCCTATCCACATTCCATCACCAATTCACCAACAATTTTTTTGTTTCCCT
CCACCCCCCCCCN
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGTTTTATGGCAGTCTTAGGA
TCACGGTGCCATCCCTTGCCATCCTCTGCCCTGCTTGGAACAGGCATCCC
TTTCATCCAGTCTGCTCACACTGTGTGAGCCGCTTGCCTACCATGAGCTA
GCTCAGTCACCACAGTAATTCTTCAGTGCCAAGGCCCAAATGTTCAAATC
ACTTTTACGGAACACTAACCACAAAGCAGAGAAGCACTAATTCCACTGAT
TGTGATATTTGTAAGAGGAAGCCAGAGGACACTTCCTTGAACTGAAAAAG
AAGAGAGATATTTTGAAGAGACACCACACCCATTTAATGCCTCTTGCAGG
GAGGGTAGTGTCAGAACACCTTTACTTACACTAGCTATTGTGATACCCTA
CTGTGCTGAACTGTAAATTAAACTTCAGGGTGAGTGTATGTTTCTGTAGG
AAATGAAGTATGCACACTATTCAGTATCATCCATAACTCTCAGGAGCTCT
TCGGACTTGGAACATTCCGCCTCTCTCAGAGGAGACTACACAACTCTTAC
TTGTGCTTTGGACACATACATTTGTGACACACTGTGGAGGAGACGGAAGA
AGGCCATTTGGTGGGCAGCTCTTCTATGGCCAAATCTTTTATCAAAATGC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_e01.g1 MSMg01no198_e01.g1 CHROMAT_FILE:
MSMg01no198_e01.g1 PHD_FILE: MSMg01no198_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:25 2005
         (625 letters)



>mm_chr14_86866677_86867701
          Length = 1025

 Score = 1199 bits (620), Expect = 0.0
 Identities = 623/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagttttatggcagtcttaggatcacggtgccatcccttgccatcctctgccctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagttttatggcagtcttaggatcacggtgccatcccttgccatcctctgccctgctt 260

                                                                       
Query: 61  ggaacaggcatccctttcatccagtctgctcacactgtgtgagccgcttgcctaccatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaacaggcatccctttcatccagtctgctcacactgtgtgagccgcttgcctaccatga 320

                                                                       
Query: 121 gctagctcagtcaccacagtaattcttcagtgccaaggcccaaatgttcaaatcactttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagctcagtcaccacagtaattcttcagtgccaaggcccaaatgttcaaatcactttt 380

                                                                       
Query: 181 acggaacactaaccacaaagcagagaagcactaattccactgattgtgatatttgtaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggaacactaaccacaaagcagagaagcactaattccactgattgtgatatttgtaaga 440

                                                                       
Query: 241 ggaagccagaggacacttccttgaactgaaaaagaagagagatattttgaagagacacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagccagaggacacttccttgaactgaaaaagaagagagatattttgaagagacacca 500

                                                                       
Query: 301 cacccatttaatgcctcttgcagggagggtagtgtcagaacacctttacttacactagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacccatttaatgcctcttgcagggagggtagtgtcagaacacctttacttacactagct 560

                                                                       
Query: 361 attgtgataccctactgtgctgaactgtaaattaaacttcagggtgagtgtatgtttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 attgtgataccctactgtgctgaactgtaaattaaacttcagggtgagtgtgtgtttctg 620

                                                                       
Query: 421 taggaaatgaagtatgcacactattcagtatcatccataactctcaggagctcttcggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggaaatgaagtatgcacactattcagtatcatccataactctcaggagctcttcggac 680

                                                                       
Query: 481 ttggaacattccgcctctctcagaggagactacacaactcttacttgtgctttggacaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggaacattccgcctctctcagaggagactacacaactcttacttgtgctttggacaca 740

                                                                       
Query: 541 tacatttgtgacacactgtggaggagacggaagaaggccatttggtgggcagctcttcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacatttgtgacacactgtggaggagacggaagaaggccatttggtgggcagctcttcta 800

                                   
Query: 601 tggccaaatcttttatcaaaatgc 624
           ||||||||||||||||||||||||
Sbjct: 801 tggccaaatcttttatcaaaatgc 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)