BAC Information

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BAC

Clone NameMSMg01-198L16
Chromosome14 (Build37)
Map Location 113,069,730 - 113,069,970
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198L16.T7 (MSMg01no198_l16.b1)MSMg01-198L16.TJ (MSMg01no198_l16.g1)
ACCAG385936AG385937
length750716
length of high quality
(start - end)
248 (47 - 294)284 (81 - 364)
definitionCHROMAT_FILE: MSMg01no198_l16.b1 PHD_FILE: MSMg01no198_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:03 2005CHROMAT_FILE: MSMg01no198_l16.g1 PHD_FILE: MSMg01no198_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTGTTTATAATTTCTAGTTGGTGGGTATTTTGTTTTGGTTTGT
TTTACATTTTCCCAGTTAGAAAACTTTTGGCAATAAAGATATTTTTTTCT
TTAGTTAGTTATTATTTTATTGTATCTTTATTGTTTTTACACTTACTGTG
TCCTGATTATAGTTTTCCTTCCCTATACCCGGCCAAGTTTTTCTACAGGT
CTTTTCATATCAATATCCCTTCTGTCTTTCTGTCTCTCATTATCCAACCA
GCAGGCTTCCAAGAGATATTTTTTTTTTTTAACACCATATCCTATAATAA
TATAAATTTTTTTGTAGTTCTCGNANACAGAAACCCTTTAGAATATTTAA
TGATGAATATATGTGAACCCCCCCCCTACACAAAAAAAAACTGTCGCTGT
ATAATATAGTTTCTGAAATATGACCTGTATTCTAAAATTGCCTATTCAGT
ATCCATGGCTTTTAATACAAATTGCTCTTTTACATTCGTTTACTTGTCTT
TCTACTGTATGCATGTCCCCCCCTTACGAGTCTTCAACTCTCGTAGTACT
CATCTTTTTACAACCTTAACTTTTTTACATTCTTTCCTTATTCTTCCCTC
TCGATTTCTATCTTTCGCCATTCTACATTTTTTACTTTCTTTTATTTCTT
TTAGAACTTCTGTTTCTCTCCACAACTGCTTTGGATTTATTTTAACCCCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTATCTTGTGTTCTAATA
TGATGCAAGAAATTATTTCAATCTTCTTATATCAGTTGAGGCCAATTGCC
TTGTGACTGAAAATATGATCAGTTTTGCAGAAGGCTTTAGGAAATGCTGA
GAAGAAATTATATTCTTTTGTGTTTAGGTGAAATGAATTTGTTTTGTCTT
AGAATATCGTGTTTTCTCTATATATGGTGATAGAGTGTTTTGCTGAGTAT
CAAAGTCTGGGCTGACATTTGTAATCTATGGTGATCTTTGTTGAAAACCC
ACGTGTAATTTTTTTTTTCCTTCCATTCCCANNCCCCTGATGTTTGTTCT
TTTTATAGTATCTAAAACCCCCCCCATAAAAAACATTAAAAACGTTTTAG
ACTTATCCTTTCCCTATACTGATATCAATTTCTTCTATTTTATCTTCTAA
GCCTCAGATTCTCTTTTCCATATCTTGTATTCTATTGGCTATTCTTCTGT
GCATAGTTCCTATTCTCTTTTCTAGGTGGGCCACCTCTAGAACTGCCTTA
GTTTATGTTTTCCTTATTGCTTCTATTTCCACTTCTACTCCCTGCAAAAT
TTTTTTTTTTCCTTTTCTTTTACCCTCCAGATTATATCATTCCGGCATAT
ACCGTAAGACATTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_l16.b1 MSMg01no198_l16.b1 CHROMAT_FILE:
MSMg01no198_l16.b1 PHD_FILE: MSMg01no198_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:03 2005
         (248 letters)



>mm_chr14_113069526_113070172
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgtttataatttctagttggtgggtattttgttttggtttgttttacatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaattctgtgtttataatttctagttggtgggtattttgttttggtttgttttacatttt 386

                                                                       
Query: 65  cccagttagaaaacttttggcaataaagatatttttttctttagttagttattattttat 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 cccagttagaaaacttttggcaataaagata-ttttttctttagttagttattattttat 327

                                                                       
Query: 125 tgtatctttattgtttttacacttactgtgtcctgattatagttttccttccctataccc 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtatctttattgttttcacacttactgtgtcctgattatagttttccttccctataccc 267

                                                                       
Query: 185 ggccaagtttttctacaggtcttttcatatcaatatcccttctgtctttctgtctctcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggccaagtttttctacaggtcttttcatatcaatatcccttctgtctttctgtctctcat 207

             
Query: 245 ta 246
           ||
Sbjct: 206 ta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space:   152482
Effective search space used:   152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)