Query= MSMg01no201_i19.b1 MSMg01no201_i19.b1 CHROMAT_FILE:
MSMg01no201_i19.b1 PHD_FILE: MSMg01no201_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:50 2005
(762 letters)
>mm_chr14_107960424_107961583
Length = 1160
Score = 1328 bits (687), Expect = 0.0
Identities = 741/759 (97%), Gaps = 2/759 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctgcctgtaggaatgcttatgatacacttcatgataaataataaaaaggctcc 63
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattcctgcctgtaggaatgcttatgatacacttcatgataaataatcaaaaggctcc 263
Query: 64 attccaatgcattactgatttgggtacccgcatttttcaaacgtggtctataggaaggat 123
|||| || ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 264 attcaaa-gcattactgatttgggtacttgtatttttcaaacgtggtctataggaaggat 322
Query: 124 cccaggaaaggctattttggtctcctatttcctattatttcctgtcacctgtcagttgca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cccaggaaaggctattttggtctcctatttcctattatttcctgtcacctgtcagttgca 382
Query: 184 tcttttcacatctgttctgaaatggtttatcatttcagctctgttcaatgttcagtattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcttttcacatctgttctgaaatggtttatcatttcagctctgttcaatgttcagtattt 442
Query: 244 ttgactcattctgcttttcttaatcacttccccaaaagtaatcataatctccctcaattg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgactcattctgcttttcttaatcacttccccaaaagtaatcataatctccctcaattg 502
Query: 304 cctcgcagagaggaagtggagcacatctaatcccacatcacaatctatacaattcataga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctcgcagagaggaagtggagcacatctaatcccacatcacaatctatacaattcataga 562
Query: 364 atgcatcaaattatgcttataaaaataattttcaaatggtgacaaatcttaactcttatt 423
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 563 atgcatcaaattatgcttataaaaataattttcaaatggtgacaaatcaaaattcttatt 622
Query: 424 ttacatgttctatcataaggactcattgtttctataagtctgggaaggctttagggaaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttacatgttctatcataaggactcattgtttctataagtctgggaaggctttagggaaac 682
Query: 484 aaatttgcaattttcttcactcaatttagtcttttttcatagtatttgcatgtgagatat 543
|||||||||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||||
Sbjct: 683 aaatttgcaattttcttcacgcaattgagt-ttttttcttagcatttgcatgtgagatat 741
Query: 544 gaagtatttgatgcatagtgatttcttttttctgtacaaatagtatgttgttttctcata 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 742 gaagtatttgatgcatagtgatttcttttttctgtacagatagtatgttgttttctcata 801
Query: 604 atactgcattcactcatttttactacattttaactgaagtttctttcactttatctttat 663
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atactgcattcactcatgtttactacattttaactgaagtttctttcactttatctttat 861
Query: 664 tcttacttattccttgattgtttcgaaagccctctaacattttactgactgctttttcta 723
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 862 tcttacttattccttgattgtttcgaaagccctttaacattttactgactgctttttcta 921
Query: 724 tatcccatgaataagtaaatacagtttatagatatgtaa 762
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 922 tatcccatgaataagtaaatacagtttaaagatatgtaa 960
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1160
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1150
Effective search space: 864800
Effective search space used: 864800
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no201_i19.g1 MSMg01no201_i19.g1 CHROMAT_FILE:
MSMg01no201_i19.g1 PHD_FILE: MSMg01no201_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:50 2005
(548 letters)
>mm_chr14_107996908_107997855
Length = 948
Score = 977 bits (505), Expect = 0.0
Identities = 511/513 (99%)
Strand = Plus / Minus
Query: 36 tttgctacgctggactcatgtgagtttgtgaattggacttattctatctctgactcactg 95
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 tttgctatgctggactcatgtgagtttgtgaattggacttattctatctctgactcactg 889
Query: 96 tgtcaaatctttctctgatctgtcactttgtctgcccctcaactagatgttattgtttgg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tgtcaaatctttctctgatctgtcactttgtctgcccctcaactagatgttattgtttgg 829
Query: 156 gattaaaagtgtatactgaaggtttttctgcaggtgaacccttgccagaacagccgtgtt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 828 gattaaaagtgtatactgaaggtttttctgcaggtgaacccttgccagaacagccatgtt 769
Query: 216 actggattaaaattcctctagactcatgaatattaatatgtattcaaatacctctttaaa 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 actggattaaaattcctctagactcatgaatattaatatgtattcaaatacctctttaaa 709
Query: 276 attactttgttaattattttccaatatttcttaattgtcctgttagattttttctttatc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 attactttgttaattattttccaatatttcttaattgtcctgttagattttttctttatc 649
Query: 336 tatttaaaatattgtattctgtagtaccttccttggaaaattccctcctacctcatggta 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tatttaaaatattgtattctgtagtaccttccttggaaaattccctcctacctcatggta 589
Query: 396 ccttaccagctaagcaatctcattgagtattccaaagaagtcacacatataaaacgcata 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccttaccagctaagcaatctcattgagtattccaaagaagtcacacatataaaacgcata 529
Query: 456 aaggtggtatccacaaacagaaaaaagttcaacatttgtccttttggttctatgttacat 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaggtggtatccacaaacagaaaaaagttcaacatttgtccttttggttctatgttacat 469
Query: 516 tttgttttgttttggagtgtgtgtgtgtgtgtg 548
|||||||||||||||||||||||||||||||||
Sbjct: 468 tttgttttgttttggagtgtgtgtgtgtgtgtg 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
