BAC Information

Click to search

BAC

Clone NameMSMg01-203B20
Chromosome14 (Build37)
Map Location 67,929,395 - 67,929,682
singlet/doubletsinglet
Overlap geneEbf2, EG628416
Upstream geneTrim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
Downstream geneLOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203B20.T7 (MSMg01no203_b20.b1)MSMg01-203B20.TJ (MSMg01no203_b20.g1)
ACCAG388007AG388008
length887758
length of high quality
(start - end)
---290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no203_b20.b1 PHD_FILE: MSMg01no203_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:10 2005CHROMAT_FILE: MSMg01no203_b20.g1 PHD_FILE: MSMg01no203_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGGGGGGGNCCNANNNNAAAAAAACAAANCNNCNAAAAAANNAAAATAA
AAATTGCGGCGGCAAAGGAACATAATTTCCAAGCCGANNGANNNNNNNNN
TTTAACAAAAAAGGAGGNANGNNNNNNNNNANAGNNAAGAAGAAAGGNGN
TGTTATTCCGAAAAAAAGGAGGNNAGGGNAGGNGAAGGNGNGAGNGAGNG
NGNGAGAGNANGGAAAAGAGNGANAAAAAAAGAANGAANGAAGGAAGGAA
AGAAAGAAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAATTTTTTTTTAA
AAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAA
AAAAGGAAAATAATAAATTGGTTATNAAAAAAAANAGAAAGAAAAAGGAA
AAAAGATTTTTTTTTTTTCCAACCCCCACCCCACCAGAAAAAGGAAGAGG
AAGGGGGGGGGGGGGGGGGGGGGGGCCCCCCAAAAAAAAAAAAAAAAAAT
GGGGGGGGGGGGGGGGGGGGGAGCATATCAGAAGGAGCTTAAAAAGATAG
AGTAGGTAATGAATATTACATGGTAAAATAAAAATAAATGTAACGAAATA
AAAAGAGGTAGAAAGAAAGAGAGAAGGAAAAAATAAAAAGAAAAAAAAGA
GAAAAGAAAAAAGAGTATAGTAGAGATAGGAGAAAGAAAATAAATTAGTG
AGAATAAAAAAATATAATAATAAAATAAAGAAAATATAGGAAGGAAAAAG
AATAAAATTTATAGGAAAAAAAAAAAGAAAAGAAGAATTATTTTTTTTTT
TTTTTATACAAAAAAAAAAAAAAATAAACGGAATAGATATGAGGGAAGAG
ANTAAAAGATGATAAGGAGTGAAGAAGAAGGGGGGAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCTCTCCTGGCACTAATTTCCTAG
TCCATCTATAAACTGGAGGGTGAAAACATTACCTGTTTCTCGGGGTTGTG
GTAAGCGTCCACGGGCTGATGTGTTAAGCAGAGCTTACTTTGGGGGCTAA
TACACAGAAAATGTTGGCCACTATTATTTATTATTCTCACAACAGGACTT
AGGAAAAGATTTTTATGAGTCCTGGAATCAACAAGGAAGTGGCCACACAG
AGAGATGGCAAAATAACACAGCCCTTTTCATGCCATTGCTTCTTCAGACT
CCTGACCTGCTTTTTAATGATCCCCCCCCACCCCCANANATCACACAGGN
TTANACAGAGAGACGCACTCTCCACAAAAAAAAAAAANNGATGGGGGGCG
GAGAGCTAGCTGAGGAGAGCTATCCACCCTCTGTGGTCTCCTGACAAACC
TGATTGCTACCTCTAGACTGATTGCGGATTTTCTCATGTTGGATTGCTAC
CCTCCATTGTCTGTTTTTATTTTCGTTTTCCGCTTCTCCACTCCCTTTTT
TCCCCTATTTTCTCTTCCTCTCCTATTTTGCTATTGACGGCTCTATTTTC
CTCTACTTTCTATGATCTCATATTTATCTCCTCCCATCTCGAATTTCTAT
TATCCTCTCTTCTATATTTCTTACCCCGCCCCCTTCATTTTCTTTCCTTC
CTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_b20.g1 MSMg01no203_b20.g1 CHROMAT_FILE:
MSMg01no203_b20.g1 PHD_FILE: MSMg01no203_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:10 2005
         (290 letters)



>mm_chr14_67929054_67929743
          Length = 690

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctctcctggcactaatttcctagtccatctataaactggagggtgaaaacattacct 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 629 catctctcctggcactaatttcctcgtccatctataaactggagggtgaaaacattacct 570

                                                                       
Query: 61  gtttctcggggttgtggtaagcgtccacgggctgatgtgttaagcagagcttactttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gtttctcggggttgtggtaagcgtccacgggctgatgtgttaagcagagcttactttggg 510

                                                                       
Query: 121 ggctaatacacagaaaatgttggccactattatttattattctcacaacaggacttagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggctaatacacagaaaatgttggccactattatttattattctcacaacaggacttagga 450

                                                                       
Query: 181 aaagatttttatgagtcctggaatcaacaaggaagtggccacacagagagatggcaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaagatttttatgagtcctggaatcaacaaggaagtggccacacagagagatggcaaaat 390

                                                           
Query: 241 aacacagcccttttcatgccattgcttcttcagactcctgacctgctt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aacacagcccttttcatgccattgcttcttcagactcctgacctgctt 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)