BAC Information

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BAC

Clone NameMSMg01-203J18
Chromosome14 (Build37)
Map Location 113,605,059 - 113,605,346
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203J18.T7 (MSMg01no203_j18.b1)MSMg01-203J18.TJ (MSMg01no203_j18.g1)
ACCAG388310AG388311
length767805
length of high quality
(start - end)
320 (46 - 365)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no203_j18.b1 PHD_FILE: MSMg01no203_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:49 2005CHROMAT_FILE: MSMg01no203_j18.g1 PHD_FILE: MSMg01no203_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGTAACACCGAATGGCAGGGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATCCAAACCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGTTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCTTCAG
AAAATTGGACATAGTAATACCGGAGGATCCAGCAATACCTCTCCTAGGCA
TATATCCAGAAAATGTCTTTATTGCCCCCACCCCACACATGCTCCACTAT
ATTCATAGCAGCCTTATTCCCCCCCCCCCCGAAGCTGGAAAAAACCTAGA
TGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGTCATCATCCTGAGTGAAGTATCACATTTACAA
AGGAACTTACACAATATGTACTCATTGATTACCGGATATTATCCCCAAAC
TTTTGATTCTCCAGACTATATCATCTCATTTGCCTTATTTTCTGATAATC
TCATTATTTACTGTATTACCTGAATTTGCTTTTACCACTATGCCCCTTCC
TTTATTATTTGCGTTTG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAAGTACAAAGCTATGAGAA
AACGCTTACTATAGAATTTCAGTTAAATAAAATGTTTGAAAGAAGAATAT
ATGAACTTATTACCAAAGAGAAGTCATTGTTATGAAACAAGTTCCTCCTA
GAAAAATATAATTGATATATATGTTCATAAATATGAATATATACATGTAT
ATACATATGTATATATATGTATATATACATATAGAGAAAGCTGAGATTTC
TTTCATGAGTGTGTGTGTCTCTGTGGGTGTGTATGTGCATGTATGTAGAT
GAGTGTGTGATTTTTTTTTTTATTTCCCCCAACACCCCCCAAAAAAAAGN
GANNNGTGGGTGGTTTTTTTTCCCCCCCCCAAAAAAAAAAAAAANNNNTG
GGGGGGTGGGGGCGATCATCGCTTCCTTCTTATTTTACTCTCCCCATTTA
TATTTTATCCTTACGCCCATCCCCTATTTTAATCTTATACATTTTTTTCC
TTCTTTTCTATTATTCCATATTTCATTATCACCATCTTTTATTTTCCTTT
CTTCCTGCATCCCCTATAACCTTTTATTTATTCATTCTTTATTTTCCTAT
TTTCATTTCTCTTTTTTTACGCCTCTTTATTATCCACAATCTCTTTACGT
TCTCTCTTTTTATCCCCTTCCCTCTTACCAATCTTTTCTTTTATCACCTA
TTTACTTTACACTTCCCCCGCTCCTCGCCCCTTTGTTCATCTATTTTATT
TCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_j18.g1 MSMg01no203_j18.g1 CHROMAT_FILE:
MSMg01no203_j18.g1 PHD_FILE: MSMg01no203_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:49 2005
         (287 letters)



>mm_chr14_113605009_113605695
          Length = 687

 Score =  426 bits (220), Expect = e-123
 Identities = 268/296 (90%), Gaps = 20/296 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaagtacaaagctatgagaaaacgcttactatagaatttcagttaaataaaatgtt 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 338 catgaaagtacaaagctatgagaaaacgtttactatagaatttcagttaaatgaaatgtt 279

                                                                       
Query: 61  tgaaagaagaatatatgaacttattaccaaagagaagtcattgttatgaaacaagttcct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgaaagaagaatatatgaacttaataccaaagagaagtcattgttatgaaacaagttcct 219

                                                                       
Query: 121 cctagaaaaatataattgatatatatgttcataaatatgaatatatacatgtatatacat 180
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 218 catagaaaaatataattgatacatatgttcataaatatgaatatatacatgtatatatat 159

                                                                       
Query: 181 atgtatatatat------------gtatatatacatatagagaaagctgagatttctttc 228
           || |||||||||            ||||||||||||||||||||||||||||||||||||
Sbjct: 158 atatatatatatatatatatatatgtatatatacatatagagaaagctgagatttctttc 99

                                                                   
Query: 229 atgagtgtgtgtgtctctgtgggtgtgtatgtgcatgtatgtagatgagtgtgtga 284
           |||||||||||| ||||||||        |||||||||||||||||||||||||||
Sbjct: 98  atgagtgtgtgtatctctgtg--------tgtgcatgtatgtagatgagtgtgtga 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)