BAC Information

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BAC

Clone NameMSMg01-206G21
Chromosome14 (Build37)
Map Location 17,826,853 - 17,827,233
singlet/doubletsinglet
Overlap genenone
Upstream gene1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
Downstream geneThrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206G21.T7 (MSMg01no206_g21.b1)MSMg01-206G21.TJ (MSMg01no206_g21.g1)
ACCAG390046AG390047
length739741
length of high quality
(start - end)
239 (128 - 366)458 (130 - 587)
definitionCHROMAT_FILE: MSMg01no206_g21.b1 PHD_FILE: MSMg01no206_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:36 2005CHROMAT_FILE: MSMg01no206_g21.g1 PHD_FILE: MSMg01no206_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGTAAACGCAAATCAAAACAACCCTGAGATT
CTACCTCACACAAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCTCTACTGGTACCACCGACACATGCCCACTATGT
TCATAGCAGCCTTATTTACCCCACCCAGAAGATGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAG
GATATCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCATGAAG
AATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAGAATTAGAAATCTAGAGAA
AGGTAGGAGGTTAGAAGCAGAGTAGATGGGGTAAACACTTGAGGGGTTGG
CCTTCATAGCTACTCCTGTGATAACATCCTGTGCTCCTCTGGATAACACT
CCTGAAGGAGGCACACATCCTCCTGTTTCTAGTCAATCACATTGCTACCC
ACAAAGTGGTGTGTGTAGTGACTAGATAAGTTTGCTATTGGTAGAAAATA
AACTAACTTACAACTCTGTGTCTGGGAACAATAACTACTCCCCGGTTTAT
AAGGGTAAAGATCAAAAGTCTGAGCAATCCTCAGAGGACTGGAGTTGTTT
GTTCAGTGGTAAGGCAGCCCTCCATTCAACAAGAAGTTTGGAGATAGGTC
CCTTGCTAGAGCCCAGTCTTGCTGGCTGGTGTGTTATAAGACTCAGTCGT
CCTTTGGGATTGAAATCTTTCACATTGTCCTATGTTCCATGCTCCTTTTT
ATAGATAGCTCCTTTTAGTGACTGATTTTTACTTGTCTTATGTGACAATG
TGCGCAACAGTGTATACGCACATGTGTGTACATCCTTGTATGAGTATCCG
CACATACCATAAGCTGTTATATCCCTGTAACTAGAAGTCCTTGTTGTTGT
GGGTTGTCTGAATTTGCCCACTGAAAACCGCATTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_g21.g1 MSMg01no206_g21.g1 CHROMAT_FILE:
MSMg01no206_g21.g1 PHD_FILE: MSMg01no206_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:37 2005
         (458 letters)



>mm_chr14_17826653_17827510
          Length = 858

 Score =  540 bits (279), Expect = e-157
 Identities = 376/457 (82%), Gaps = 76/457 (16%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtaaacacttgaggggttggccttcatagctactcctgtgataacatcctgtgctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtaaacacttgaggggttggccttcatagctactcctgtgataacatcctgtgctcctc 260

                                                                       
Query: 61  tggataacactcctgaaggaggcacacatcctcctgtttctagtcaatcacattgctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggataacactcctgaaggaggcacacatcctcctgtttctagtcaatcacattgctacc 320

                                                                       
Query: 121 cacaaagtggtgtgtgtagtgactagataagtttgctattggtagaaaataaactaactt 180
           |||||||||||||||||||||||||| | ||||||||||||||  ||||           
Sbjct: 321 cacaaagtggtgtgtgtagtgactaggtcagtttgctattggt--aaaa----------- 367

                                                                       
Query: 181 acaactctgtgtctgggaacaataactactccccggtttataagggtaaagatcaaaagt 240
                               |||                                     
Sbjct: 368 --------------------aat------------------------------------- 370

                                                                       
Query: 241 ctgagcaatcctcagaggactggagttgtttgttcagtggtaaggcagccctccattcaa 300
                 |||||||||||||||||||||||| |||||||||||||||||||||  ||||||
Sbjct: 371 ------aatcctcagaggactggagttgttcgttcagtggtaaggcagccctagattcaa 424

                                                                       
Query: 301 caagaagtttggagataggtcccttgctagagcccagtcttgctggctggtgtgttataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caagaagtttggagataggtcccttgctagagcccagtcttgctggctggtgtgttataa 484

                                                                       
Query: 361 gactcagtcgtcctttgggattgaaatctttcacattgtcctatgttccatgctcctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gactcagtcgtcctttgggattgaaatctttcacattgtcctatgttccatgctcctttt 544

                                                
Query: 421 tatagatagctccttttagtgactgatttttacttgt 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 545 tatagatagctccttttagtgactgatttttacttgt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)