BAC Information

Click to search

BAC

Clone NameMSMg01-206H15
Chromosome14 (Build37)
Map Location 37,203,590 - 37,204,031
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206H15.T7 (MSMg01no206_h15.b1)MSMg01-206H15.TJ (MSMg01no206_h15.g1)
ACCAG390074AG390075
length713757
length of high quality
(start - end)
582 (36 - 617)444 (77 - 520)
definitionCHROMAT_FILE: MSMg01no206_h15.b1 PHD_FILE: MSMg01no206_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:40 2005CHROMAT_FILE: MSMg01no206_h15.g1 PHD_FILE: MSMg01no206_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAC
TATTCCCATCTGGTCCTGGGCTTTTTGGTCGGGAGATTTTAATGACTGCT
TCTATTTCTTTACGGGTTATTGGACTGTTTTGATGGTTTATCTGATCCTG
ATTTAACTTTGTTACTTGGTATCTGTCTAGAAAATTGTCAAATTTATCCA
GATTTTCGAGTTTTGTTAAATATAGGCTTTTGTAGTAGGATCCAATGCTT
TTTTTTTTTTTTTTATTTCCTCCATTTCTGTTGTTACACGACCTTTTCAT
TGCTGATTTGTTAATTTGGATGCTGTCTCTGTGCCCTCTGGTTAGTCAGG
CTTATCTTTCTTGTTGATTTTCTCAAAGAAACAGTTCCTGGTTTTGCTGA
TTCTCCGCATAGTTCTTTTTGTTCCTATTTGGTTGATTTTGGCCCTGAGT
TTGATTATTTCCTGCTGTCTACTCCTCTTGGGTGTATTTGCTTCTTTTTG
TTCTAGAGTTTCGGGTGTTCTATTAAGCTACTAGTGTATGCTTGCTCCAG
CTTCTTTCTGGTGGCACTCAGAGCTATGATTTTTCTTCTTCACACTGCTT
TCATTGTGTCCCATAAGTTTGGGTTTGTTGTGCCATCATTTTCATTATAT
TCTACAAAGCCTTTAATTCTTTTCTTAATTTCTTCCTCGACCATATTATC
TTTGACTTTACTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTATAATTATTACTAGAGAATTG
TGGACAATTAACATGACTTTAGAAACAAATAAGAAAACATGTTCCAATTT
TATGAAAATAATACAATTTTGATACTGAAAACAGATAAAGGTAGTACAAA
ACCAGTAAAGAACAATATACTATATGCATAAATATTCAACCATCCTTACA
AGGAATAGAATTTAGCCAAAATACAGAAATTTTAATAAATAAACTAAATA
GGGTTTATTTGAGAACTTAAGATTGTTTCAACATTTTAAAAACTAAACAG
TATATATATATACTTATATATATATACCTACATATATATGGAAAGTATAT
ATTGTATTATATGATATACACTGTCATCCATTTATATATTGACTTCATTT
AAATTCCTTTCATATATAATATATGTAATTTATTATATAATATTTATATT
ATGTAATTTATGTAAGCTATATAACATTTATATTCATATCCATTTTTTAT
TTATACACCTCCTTATCCGTTTCTTTCCTATTTCCCTTATTAAGCNNCTT
NTNNNNTTNCTTTCCTTTTTTCCCCCATGCCTTCTTTTCTTCATTTTTTT
CTTCTTCTCCTACTCCTTCCTTTTTCCTTTTTTCTCTTCTTTTCTTCCTT
TCTCCACTTTTACCCTTTCTTTCCCCTTCTTATTCCTCTTCACATTACTT
CTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_h15.g1 MSMg01no206_h15.g1 CHROMAT_FILE:
MSMg01no206_h15.g1 PHD_FILE: MSMg01no206_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:40 2005
         (444 letters)



>mm_chr14_37203558_37204401
          Length = 844

 Score =  801 bits (414), Expect = 0.0
 Identities = 435/442 (98%), Gaps = 2/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtataattattactagagaattgtggacaattaacatgactttagaaacaaataagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 474 tgtataattattactagagaattgtggacaattaacatgactttagaaataaataagaaa 415

                                                                       
Query: 61  acatgttccaattttatgaaaataatacaattttgatactgaaaacagataaaggtagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acatgttccaattttatgaaaataatacaattttgatactgaaaacagataaaggtagta 355

                                                                       
Query: 121 caaaaccagtaaagaacaatatactatatgcataaatattcaaccatccttacaaggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caaaaccagtaaagaacaatatactatatgcataaatattcaaccatccttacaaggaat 295

                                                                       
Query: 181 agaatttagccaaaatacagaaattttaataaataaactaaatagggtttatttgagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agaatttagccaaaatacagaaattttaataaataaactaaatagggtttatttgagaac 235

                                                                       
Query: 241 ttaagattgtttcaacattttaaaaactaaacagtatatatatatac-t-tatatatata 298
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 234 ttaagattgtttcaacattttaaaaactaaacagtatatatatatacatatatatatata 175

                                                                       
Query: 299 tacctacatatatatggaaagtatatattgtattatatgatatacactgtcatccattta 358
           ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 174 tacatacatatatatggaaagtatatattgtattatatgatatatactgtcacccattta 115

                                                                       
Query: 359 tatattgacttcatttaaattcctttcatatataatatatgtaatttattatataatatt 418
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 114 tatattgacttcatttaaattcctttcatatataatatatgtaatttattttataatatt 55

                                 
Query: 419 tatattatgtaatttatgtaag 440
           ||||||||||||||||||||||
Sbjct: 54  tatattatgtaatttatgtaag 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)