BAC Information

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BAC

Clone NameMSMg01-207A18
Chromosome14 (Build37)
Map Location 87,172,621 - 87,327,003
singlet/doubletdoublet
Overlap geneDiap3
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
Downstream geneEG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207A18.T7 (MSMg01no207_a18.b1)MSMg01-207A18.TJ (MSMg01no207_a18.g1)
ACCAG390428AG390429
length1,2311,216
length of high quality
(start - end)		643 (144 - 786)750 (119 - 868)
definitionCHROMAT_FILE: MSMg01no207_a18.b1 PHD_FILE: MSMg01no207_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:28 2005CHROMAT_FILE: MSMg01no207_a18.g1 PHD_FILE: MSMg01no207_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,172,621 - 87,173,263)(87,326,254 - 87,327,003)
sequence
NCCAACTTNNNNAGACATGGGCGGTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCCATCAACCCTCGGGGTCCCATAAAAAATGTCAAAGCACACATG
CAAATGCGGGCGATGCCTTTGAAAGAGAGNAGAAGGANAGAANATCAGAA
CTAGACCAGGAATTTCCAAACAACAAAAAAAATTCCAGCTCCGTCCTAAA
TCAGCCATTTTTTAATTAGAGCCATCTCAACAGTGTGTCTGTGTCCTGCC
CACTAAAGAGGACAGGGCTTCTCAGACGCAGTGTGGAGCATTGCTTATAT
AGACCAATGGCACGGTGAGTTTAGATGGAATGTACTTCAGTGTCTGCAGT
CATCATAAATCATATTTTTTTCTCCTAGAAATGAGTTATTTTTTAAAGCA
TAAAACTAGTTTCTAAAAGCGACCAGGTGTATGGTACAGTGCCTATTATA
CAGAAGCTGGGCCTGCCAAAACTTACCATAGAAAAGAAAACTTACCATTT
TCATGCAGGACTCTATGAATGAATATATTTCTAATTACACACACTCACAC
ACACCCCTGATATATAATTCTGCTGATAGATAAAATATGTATATTGCCCT
CTGACAAGCTTTCATATGATTCATGAAAGTTATCTTTTACAAGTAAGATG
GTAAACTCAGAGATGATTTTAAGAATTTAAAGGATAGCATTCCTTAAGCT
AGTTCTTTCCTAAGAACTTTGTTCACTGTTTTTATTTCCCCCTTTTGGAG
CCACACTCTCTTTATAGACAACTCTTGACATGTGACCATGGCAGAGTACA
AAACCCCACTCCTTACAGTTTATAAACAGATGCAGACATAGAACTATGCG
TCAGCTGCTTTGCCATCTGCTCCTGCCGCACAGTTTTAGATGAGAGCTAA
ACCTTGTAAGTGTGATCAAAAATGGTGGGTGAGAATCCAAGTATTTAGAG
GTTGTCCATTTACACATACATTTTATTCTGAAGCATTTCAAGGTTTATGG
AAAGGACCCAAAAAATTTTAAAAAATTAATAAATAACCACTTACCCAACC
TTTAAAAATTACCCCCCAATTCGGAAAAATTTGTGTTACAAAAGTCTGGG
AAATTAAAAATTTAGGGGGGTTCCCGGGAAGGAAACTTTTATAATGGAAG
AAATTGGGTTTTTTTTAATTTAAAATAAGTTGGGGGGCCGACAAGCGGAA
AAAAAAAATAAATTTTTTTAGTAATAAAAAA

TTTTNTTAAGATGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGTGTTAGCATCTTAGAATAATAAT
TTTTTTTAAATTCATTTTTGAGATAATCCGACCGTTTTCATGAAGCTGTA
TCCTTTTTCTCACACATTGATACCCCAAGGATAGTCCGCTTGGTATTACA
GCATTAACATGGTTTTGTTAGCTCATATAATTCATGGCTACCCTTTCTAG
TCTCAAGTTGCTTAGGACTGTGTATACAGACATTAATAAGCTGGCTTATT
AAATCCAGCATGCTAGAGATCCTGAATTGCCCACGTCCTCGTCTGGACTT
AATCCTTCTTTGTAATTCTCGTTCTTTCAGTAATGGCTTCTTTTCTTTCA
GCCGCGTATTCTCTGGTGTGAGCTTTAGTATGTCGTGCATTAGTGTTCAA
AGGCTTTATTGCAGATTCTTGTAGCAGAAGCATATTTCTACTTCCTAGCA
TTATCTGAGCATATGCATGAGAAGGTTGTGCTGCCAAAACAGAAGTTCAT
TGTAAAAATGCCTTTTATGAATACTTATATTATTCCATGATGAAGAAACG
CCAGTGTTCTTGTGAATCCATAAAGACCAGGAGGCAGAATGGTTCTTTAG
GGTTGGGAAATACTAAGGTACATGGTAAAATATATAAGGGTATTTTTCTG
AGTTACCAACTGAACCAAGAAAGATCATCTGACAAATGAATATAATTTCT
TTCTTAGTGGGGTTCTTAATTCTAATACTATTTTCTTTTGTCTCTGATTT
TAAATCTCTAAGATCAAAACTCGCCTTCTGTGCAGCAAGCATACTCTTAA
TATGTGCCTCATCACTACCCAGAGCAGTTTTCATATTCACTTTATTTTTC
CCCACATTAGATTTTTTTTTTAATAATTTACATCCCAAATGTTTCCTTCC
CCCAACCCCACCTTGTAAAGATCTTTTTCCCACCCCTTTCTTCCTCTGAA
AAAAACCCCCTCCTCCCCCCAAGTTTGAATCAAAACTTCTTTATTAATAA
TGGGACTCTCCTCCCCTGTGTTGAAAAGAAAGAGTCCCCTCCCCCATTAT
TAGTTCGGGGGTTTGTATCCCCCCCCCCCTAGGTCTCTTTTTTTTCTCAC
CCCCTCCTATTCTCTTGCAATTATTAAACATTTTTTTTCTTTTTGGTGTG
TTCTTCTCCCTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_a18.b1 MSMg01no207_a18.b1 CHROMAT_FILE:
MSMg01no207_a18.b1 PHD_FILE: MSMg01no207_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:28 2005
         (643 letters)



>mm_chr14_87172421_87173463
          Length = 1043

 Score = 1236 bits (639), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagaactagaccaggaatttccaaacaacaaaaaaaattccagctccgtcctaaatca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atcagaactagaccaggaatttccaaacaacaaaaaaaattccagctctgtcctaaatca 260

                                                                       
Query: 61  gccattttttaattagagccatctcaacagtgtgtctgtgtcctgcccactaaagaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccattttttaattagagccatctcaacagtgtgtctgtgtcctgcccactaaagaggac 320

                                                                       
Query: 121 agggcttctcagacgcagtgtggagcattgcttatatagaccaatggcacggtgagttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcttctcagacgcagtgtggagcattgcttatatagaccaatggcacggtgagttta 380

                                                                       
Query: 181 gatggaatgtacttcagtgtctgcagtcatcataaatcatatttttttctcctagaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatggaatgtacttcagtgtctgcagtcatcataaatcatatttttttctcctagaaatg 440

                                                                       
Query: 241 agttattttttaaagcataaaactagtttctaaaagcgaccaggtgtatggtacagtgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttattttttaaagcataaaactagtttctaaaagcgaccaggtgtatggtacagtgcc 500

                                                                       
Query: 301 tattatacagaagctgggcctgccaaaacttaccatagaaaagaaaacttaccattttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattatacagaagctgggcctgccaaaacttaccatagaaaagaaaacttaccattttca 560

                                                                       
Query: 361 tgcaggactctatgaatgaatatatttctaattacacacactcacacacacccctgatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaggactctatgaatgaatatatttctaattacacacactcacacacacccctgatat 620

                                                                       
Query: 421 ataattctgctgatagataaaatatgtatattgccctctgacaagctttcatatgattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataattctgctgatagataaaatatgtatattgccctctgacaagctttcatatgattca 680

                                                                       
Query: 481 tgaaagttatcttttacaagtaagatggtaaactcagagatgattttaagaatttaaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaagttatcttttacaagtaagatggtaaactcagagatgattttaagaatttaaagg 740

                                                                       
Query: 541 atagcattccttaagctagttctttcctaagaactttgttcactgtttttatttccccct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atagcattccttaagctagttctttcctaagaactttgttcactgtttttatttccccct 800

                                                      
Query: 601 tttggagccacactctctttatagacaactcttgacatgtgac 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttggagccacactctctttatagacaactcttgacatgtgac 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no207_a18.g1 MSMg01no207_a18.g1 CHROMAT_FILE:
MSMg01no207_a18.g1 PHD_FILE: MSMg01no207_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:28 2005
         (750 letters)



>mm_chr14_87326054_87327203
          Length = 1150

 Score = 1427 bits (738), Expect = 0.0
 Identities = 747/750 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagataatccgaccgttttcatgaagctgtatcctttttctcacacattgataccccaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 tgagataatctgaccgttttcatgaagctgtatcctttttctcacacattgataccccaa 891

                                                                       
Query: 61  ggatagtccgcttggtattacagcattaacatggttttgttagctcatataattcatggc 120
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ggatagtgtgcttggtattacagcattaacatggttttgttagctcatataattcatggc 831

                                                                       
Query: 121 taccctttctagtctcaagttgcttaggactgtgtatacagacattaataagctggctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 taccctttctagtctcaagttgcttaggactgtgtatacagacattaataagctggctta 771

                                                                       
Query: 181 ttaaatccagcatgctagagatcctgaattgcccacgtcctcgtctggacttaatccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttaaatccagcatgctagagatcctgaattgcccacgtcctcgtctggacttaatccttc 711

                                                                       
Query: 241 tttgtaattctcgttctttcagtaatggcttcttttctttcagccgcgtattctctggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tttgtaattctcgttctttcagtaatggcttcttttctttcagccgcgtattctctggtg 651

                                                                       
Query: 301 tgagctttagtatgtcgtgcattagtgttcaaaggctttattgcagattcttgtagcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgagctttagtatgtcgtgcattagtgttcaaaggctttattgcagattcttgtagcaga 591

                                                                       
Query: 361 agcatatttctacttcctagcattatctgagcatatgcatgagaaggttgtgctgccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agcatatttctacttcctagcattatctgagcatatgcatgagaaggttgtgctgccaaa 531

                                                                       
Query: 421 acagaagttcattgtaaaaatgccttttatgaatacttatattattccatgatgaagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acagaagttcattgtaaaaatgccttttatgaatacttatattattccatgatgaagaaa 471

                                                                       
Query: 481 cgccagtgttcttgtgaatccataaagaccaggaggcagaatggttctttagggttggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cgccagtgttcttgtgaatccataaagaccaggaggcagaatggttctttagggttggga 411

                                                                       
Query: 541 aatactaaggtacatggtaaaatatataagggtatttttctgagttaccaactgaaccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatactaaggtacatggtaaaatatataagggtatttttctgagttaccaactgaaccaa 351

                                                                       
Query: 601 gaaagatcatctgacaaatgaatataatttctttcttagtggggttcttaattctaatac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaaagatcatctgacaaatgaatataatttctttcttagtggggttcttaattctaatac 291

                                                                       
Query: 661 tattttcttttgtctctgattttaaatctctaagatcaaaactcgccttctgtgcagcaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tattttcttttgtctctgattttaaatctctaagatcaaaactcgccttctgtgcagcaa 231

                                         
Query: 721 gcatactcttaatatgtgcctcatcactac 750
           ||||||||||||||||||||||||||||||
Sbjct: 230 gcatactcttaatatgtgcctcatcactac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 750
Length of database: 1150
Length adjustment: 10
Effective length of query: 740
Effective length of database: 1140
Effective search space:   843600
Effective search space used:   843600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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