BAC Information

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BAC

Clone NameMSMg01-207F14
Chromosome14 (Build37)
Map Location 113,790,871 - 113,790,978
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207F14.T7 (MSMg01no207_f14.b1)MSMg01-207F14.TJ (MSMg01no207_f14.g1)
ACCAG390610AG390611
length1,2601,255
length of high quality
(start - end)
340 (116 - 455)109 (513 - 621)
definitionCHROMAT_FILE: MSMg01no207_f14.b1 PHD_FILE: MSMg01no207_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:10 2005CHROMAT_FILE: MSMg01no207_f14.g1 PHD_FILE: MSMg01no207_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTGCACTGCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
TCACTGAGGAATCTCCCATTTATGAGAAGCACCTGAAAAAAATGTTCAAC
ATCCTTACCCTTCAGGGACATGCAAATCACCACAACACTGAGATTCTACC
TCACGCCAGTCAGAATGGCTAAGATCAAATACTCAGGTGACAGCAGATTC
TGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAAGCTGGCACAACCACTCTGTAAATCAGTCTGTTGGTTCCTCAGAAAAT
TGGATATAGTAGTAATGGAAGATCCAGAAATACCTCTCCTGGGCATATAT
CCAGAAGATGTTCCAACTTATGATAAGGACACATGCTCTACTATGTTCTT
ATTATCCTCATTTATAAGGTAAAAGCTGGAAAGAACCCAGATGTCCCTCA
ACTTATTTTATGCACCCCGAAAATGTGGTACATTTACACAATGAAAAACT
ACTCAGCAATTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATG
GAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGA
TATGTACTCATTGATAAGCCGATATTAGTCCAGAAAATTAGAATACCCAA
GATACAATTTGCAAAACACAGTAAACTCAAGAAGAAGGAAGACCAAAGTA
GGGATACTTTGTTCCTTCTTAGAAGGGGTAACAAAATACCCATGGAAGGA
GTTACTGAGAATAAGTTCTGAGCTGAGACAGAAGGAAGGACCTTCCAGAG
ACTGCCCTACCTGGGGATCCATTTCATATACAACCACCAAATTCCAAACC
CTATTGTGTATGCCAGAAAGATTTTCCTGACAGAACACTGATATACCTTA
TTTCTTGTGAGGTTATGTCCCGTGCCTAATAAATACAGAATTGGATGCTT
CCGGTCCTCTATTGGAATGTGAACCATTAGCCCCTAAGGAATGAACTAGA
GAAAGTTCCCTAAGGAGCCTAAAAGGTTCCGTCAACCCTTATTGAAGAAT
CACTTTTTTTAACTTATCCCTTACCCCCTCAAAATCCCGGGTTCTCATTT
GTCTAGTGTAACCAAAAAATGGCCCATAATTGTCCATTCATGGAATAGAA
TTTGTCCTTTTTTGTTCTTGTCTAAAAATAATATTTCCTCTCTAATAAGG
TGTATATAATGCCCAAAACTCTTTTAATTTAGAATTGTTGTCTTATTTGC
NCTCTATATT
CTTTCTTTTNNNAAATGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTCTAAAACCCCCCCNAAGGGGNAG
AANNAGACANANAGGCCCTTGAAAACCCCCACAAGGCGCAACGGNNNCAN
AACCANCAGAAGCACGAGNGNAAAGAAGAAGACAGNGGCCCCAAACAAGG
CAACACACAGAAACNCANAAAGGNNNCANGGCAGAAANANAANANANNCA
AGGNANAANNAGANANGGANANANANACACANAGAAAANANAACACACAN
AGGGGNAACANANCCGGGCGNGNANCNACACACGCACCCACNCACCCANC
AACANACGCAACACAGGNGNACACACGACCNCCCCCCAAACAACCACGAA
NGGNAANCTTTTTTTANACNNNNNNCAGNANGCANNACNNCAAAGGAACA
AAAACACCCCTTTTTTTTCCCCCCCCCAAANTNGATGAGGACCCCTGAAA
AAAAAGGAGGGTGTTAACTAAGCCTGTGTAAAGGTGAACTAAATGTTAAA
TGTCAACAAATAAGTAACAAAAGATGAAAAAACCTAAGTATTTAAATTTA
AGGGAGAGTGAAAAATGGGAAGAAAAACAGGAAGTTTATGTACAGAAAGA
AAATCTAAACCACTTAACACTTTAAAGAAGTAGTATTTTTACTCCATCAT
TTTATATATGTATAATGTTCATGGGTATATATAATTCCTGACTCAAACAA
AAATTCTTTACTGGGAAATAAGTCATCTCATTTTAGTATTTTTCTTTTAG
TAAGTATGCTACTACATGAACTACGATAGTACTGACATTTTAAATAACAT
CCAGAAATTTAATCAGGCAATTTAATACATTTTTTATTTAAAGGGAATCA
TAACTTTATACCTATTTTAAAATGTAAATACATTAAGGAAGTAAAGTTTT
ATTGACCTCAATAACCCAATATATGCCTTTTAAAAATAATAATAAAGGAT
ACCTGGAAAAAGGCGGTTATTACCTGGAATTTATATAGGAAAATTTAACT
CCTTTTTTAACTAAAAATTAATAAAATGGTCTTAAAATTAAAATAAAAAG
TGAGTTAAATTATATTTGGGGAATTCCCTACAAATTTTAGAACGCAAAAA
ATATACCTCCTTTTTTCAATCAAACTATTAATAATAGGATATATATCCTG
ACGTATTATTTTCAAGATCATTCCCTCCCAAGCACCTCTCTAACACAATA
TTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_f14.g1 MSMg01no207_f14.g1 CHROMAT_FILE:
MSMg01no207_f14.g1 PHD_FILE: MSMg01no207_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:11 2005
         (109 letters)



>mm_chr14_113790671_113791178
          Length = 508

 Score =  180 bits (93), Expect = 2e-50
 Identities = 105/109 (96%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaactaagcctgtgtaaaggtgaactaaatgttaaatgtcaacaaataagtaacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 308 gttaactaagcctgtgtaaaggtgaactaaatgttaaatgtcaacaaataaataacaaaa 249

                                                            
Query: 61  gatgaaaaaacctaagtatttaaatttaagggagagtgaaaaatgggaa 109
           ||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct: 248 gatgaaaaatc-taagtatgtaaatttaagggagagtgaaaaatgggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 508
Length adjustment: 8
Effective length of query: 101
Effective length of database: 500
Effective search space:    50500
Effective search space used:    50500
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)