BAC Information

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BAC

Clone NameMSMg01-207H06
Chromosome14 (Build37)
Map Location 123,413,569 - 123,413,840
singlet/doubletsinglet
Overlap genenone
Upstream genePhgdhl1, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneVgcnl1, Itgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207H06.T7 (MSMg01no207_h06.b1)MSMg01-207H06.TJ (MSMg01no207_h06.g1)
ACCAG390677AG390678
length1,2171,251
length of high quality
(start - end)
321 (130 - 450)272 (504 - 775)
definitionCHROMAT_FILE: MSMg01no207_h06.b1 PHD_FILE: MSMg01no207_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:24 2005CHROMAT_FILE: MSMg01no207_h06.g1 PHD_FILE: MSMg01no207_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAGCATTGGGGCTATAGACTCCATAGGGAGAGGATCCGCGGAATTCTC
TGTTCGGCTCTATACCCCATTTTTAAATTGGGCTATTTGGTTTTTTAGAG
TCTAGTTTGTTGAATTCTTTGCACCCCCCTCTTTGTATAGCTGTCTTAGT
TAGGGTTTTACTGCTGTGAACAGACTCCATGACCAAGGCAAGTCTTATAA
AAACAACATTTAATTGGGGCTAGCTTACAGGTTCAGAGGTTCAGTCCATT
ATCATCAAGGTGGGAGCATGGCAATATCCAGGCAGGCATGGTGCAGGAGG
AGCTGAGAGTTCTATATCTTCATCCAAAGGCTGCTAGTGGAAGAACAACT
TCCAGGCAACTAGGGTGAAGGTCTTAAGCCCACACCCACAGTGACACTTC
TATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTCCAGATGGT
GTTTCTCCCTGCTCCAATTATATACAAACCATCACATTAAACCTCTACCA
GATATAGGGTAGTGAAGATCTTTTCCCACTCTGTAGGCTGCCATTTTGTC
CATTTTTCAAGTTCACTAAGAGCTACTATCAGGGAAATATATATATATAT
AGAATTAATGAATTTCTAAAAATTAACCAAATCACTGACTAAGGCAGGTG
CTTAATATGTAGTAGAAAGCAACACACACACACAGAGGATCTTCATGTGA
GAGAAATGGATGGGTGGCTTTCACAATAGAATGGAGATGTTTACTGGTTT
TGGAGGTAGATATATGTTAGCTTGGATTAATTTACACAAATGTATCCTTT
GGGGGCAAAATAATCCTTATAGGAAAACCCCTTATCTGCCAACTTTTTCT
ATAACAGTACCAAGAATAATAGAAGGATTTGGCCTAAACTATTCTGAGCA
TTCCTGTCTGTTTATTAAAAAAGTCTCATGAAGTCATAATTTCCTATCTT
GGTTACTTTGGGTTTTTAAAGATTTTGTAAATAAAATAACTCATTTCAAG
TCTTTTTTTCTCTTTCCTCTCTTAAGTATAAAAATCTATTCTCTTTTATA
TATTTTTGTCCCTTTCTTTTCTTAATTTCCTCTGTTTCTCTTTCTCTTTT
TTCTTTTATTATATAATCTATACTCTTTTTTTTCTTTTTCTTCCTTATAT
CCTTATATTTTATATTCTTCTTTTTTCACTTGTTCTTTTATTCTAATATA
TTACTTTCTTTTTTTAA
NNNTTTAGATGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTGCTGACCCATAGACCCACATACCTTT
ATAGACTACTTAGCAAGAGATGTTCCGCCCCCAAAATGATGCTGTGAAGT
CATCAAAATGTCTTTCATAAGAGAAGAGCTGCTAAGATTTGTAATGTTTT
CAGCCTGAAAGACAATTATGATTGAAACAACAGCCAAGAAGATAAAACCT
TTCCACTTCCACTTATTTGGGGGAAGCCAGTGTGAAGCCTGGTTTGGTTG
TGGCTGCTGAATGGAAAACCAGTTCAAGCTTGCTAAAGATGGCTAGTGCA
TGCAGTGTTTCCCAGAGCCTTCCTAGTGAACATAGCTCTATAATAGCCTG
TTGTCACTGTCTCAGAGGTTTTACTGGGGGCCAGGATTCTGTTCTCTGTC
TCTTTTTTTTCCTACCCCTCAAGCATCTCTAGTGTCTTTTCAAACAAAAA
CCTGCACAGAACAAAGCCTGTTACCTCCCAAGAAGATTTGTAGGGGTCTA
GGAAGAGTAGTTCTTAATGGGTCCTCTCAGATTCTTGAGTTTTACTGAGA
GATCATTCCTACCTTGGCAAGAGTAAGCCATTCTCAGGATGTGGAATACC
CTGTTGAAGGCTTTTACAAAGTTGTTCAATATGCTTTGTCTATGAATAAT
TCAGAGTAAGAGAAAACACATATTTGTAATATTTGAAATTTCTATACACT
GGATGGTCATTCTCTTGATATAATTCAATGCTATGGTAAGGTCTTATATG
CCTAAAAATGCTACCTTTAATGATCTTCTGTCTATCCTGAACTTTTGACC
TTTTTTTTTTTAACATATTTTCCTCATTTACATTTCCAATGCTATCCCAA
AAGTCCCCCATACTCTCCCCCCAAATTTTCCTTACCCATCTTTCCCTTTT
TTTTTTTTTTTGGGCACTGGAGTTCCCCCTGGTACTGGGTGTATTTACAA
TTTTGCTGGTCCCATGGGGTCCTTTCTTTTTCCTGGAATTGTCCCAAAAA
ATCCATTTCTTTTTATAAACTATTCTCACCTTTAAATCTCAAAAATTTCG
GTGTACTACCTGTTGCATTGTCTATAAAGGTTGGTCTTCTCCTTATTTAT
TTTCGTCTAAACTCCCCTTAAACTTCCTCCTGTGAATTCTTTCTTCTATA
TTTTCTCTCTTATTAGTTACCTCTCGTGTAATCTATCCTCTAGTTAATAT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_h06.g1 MSMg01no207_h06.g1 CHROMAT_FILE:
MSMg01no207_h06.g1 PHD_FILE: MSMg01no207_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:24 2005
         (272 letters)



>mm_chr14_123413369_123414040
          Length = 672

 Score =  487 bits (252), Expect = e-142
 Identities = 267/272 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacagaacaaagcctgttacctcccaagaagatttgtaggggtctaggaagagtagttc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gcacagaacaaagcctgttacctcccaagaagatttttaggggtctaggaagagtagttc 260

                                                                       
Query: 61  ttaatgggtcctctcagattcttgagttttactgagagatcattcctaccttggcaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatgggtcctctcagattcttgagttttactgagagatcattcctaccttggcaagag 320

                                                                       
Query: 121 taagccattctcaggatgtggaataccctgttgaaggcttttacaaagttgttcaatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagccattctcaggatgtggaataccctgttgaaggcttttacaaagttgttcaatatg 380

                                                                       
Query: 181 ctttgtctatgaataattcagagtaagagaaaacacatatttgtaatatttgaaatttct 240
           ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 381 ctttgtctatggataattcagagtaagagaaaacacttatttgtgatatttgaaatttct 440

                                           
Query: 241 atacactggatggtcattctcttgatataatt 272
           |||||||||||||||| |||||||||||||||
Sbjct: 441 atacactggatggtcactctcttgatataatt 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)