BAC Information

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BAC

Clone NameMSMg01-208J23
Chromosome14 (Build37)
Map Location 62,163,961 - 62,164,245
singlet/doubletsinglet
Overlap gene6330409N04Rik
Upstream geneEG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865
Downstream geneLOC100042941, Trim13, Kcnrg, LOC668253, Dleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208J23.T7 (MSMg01no208_j23.b1)MSMg01-208J23.TJ (MSMg01no208_j23.g1)
ACCAG391445AG391446
length709724
length of high quality
(start - end)
237 (127 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no208_j23.b1 PHD_FILE: MSMg01no208_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:29 2005CHROMAT_FILE: MSMg01no208_j23.g1 PHD_FILE: MSMg01no208_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTTTTGTTACCACCTCAAGATTATAGGTTTTAAATGTATTAAA
CACCTTTAATCCCAGCACTTGGGCCGCAGGGGCAGGTGGATTTCTGAGTT
CGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGGCAGCCAAGGCTATAC
AGAGAAACCCTGTCTTGAAAAAACAAAACAAAAATGTATTAAGTACATTA
GGATCTCAGTGGGGGGTCAGGAAAACATTTAGAAGTGTTAAAACCCTAAA
GTATTAACATATTTGCTGGATGTGGTGGCGCACACCTTTGATCCCAGAAT
TTGTGAGGTAGTATTATGCCCACCTCCCCACCTGAGAGCAACACTGATAT
AACATTTTATACTTGATATAACATAGAAGATATTAATGCCTAATACTCAA
ATATTTAACAGCAACTTCAAAGGCAAATCAGAAACATACTTTTATCAATG
TTTTTAGGTTTATATTTGCATAATGGAGAACATGAGANGTTTTGTTTTTC
GANNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNTNNNNNNNTNTNNNTCTTNTTTTTTTTTTCCNTTTCT
TTTTTTTCTTCCTCTTTTTTTTCTCCCTTTTCCTTTTCTTCTCCTTTTTC
CTTCTCATT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATATAGACTAGGCTGCCCTTA
AACTCATAGAGATGCCCCTGCCTTGCCCTCCTCAGTGCTGGGATTAAAAG
CATGTGTCACCATGCTCTGTTCTAACCCCGGGGAAATTTTGAGCCCAATT
CTTTGAAGGGTTCTGAAACTAGAGGCAGTTAATAAGATTGCATTTAACAA
AGATCAACACTTGCAATAGAATGTTATAATTTCTAAAATGTCCCTAACAT
TAATAAATGTGAAATATTTTGAGAGATCTCTGGCCTCAAAAATACCTACT
ATCCTCTAATATTTTTTTTATTGCTCCCCTCGCCCCAGTAGTATATTGTT
TAGCAGTCAACCTAAAAATGGCCTTGCACAAGGACAGACATCCTTATGTC
CTGGTCTGCAAGAAATTCCACAAGGACAGAGCAGTGCAGTGAGGCAGCAA
GAGTCAGCAGGCATTCTCTCTGGAGATGGGACCACCTCATTAGAGCCTAT
CCCAGGGCTTTGGAATAAACGTCACCACCCGCCATGCAAACCACGTCTAC
TCAAAACAGTTCAAGCAACTCTCCCAGGCCACTCACCACTACATCTCCCT
CCTGAGGAAGGCTGTTTGCTGGCAGCCTGGTTTTCTCTTCGTTGTTGTGG
AACAAGGCTCCATCATTTCTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_j23.g1 MSMg01no208_j23.g1 CHROMAT_FILE:
MSMg01no208_j23.g1 PHD_FILE: MSMg01no208_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:30 2005
         (287 letters)



>mm_chr14_62163761_62164447
          Length = 687

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatatagactaggctgcccttaaactcatagagatgcccctgccttgccctcctcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 actatatagactaggctgcccttaaactcatagagatgcccctgccttggcctcctcagt 260

                                                                       
Query: 61  gctgggattaaaagcatgtgtcaccatgctctgttctaaccccggggaaattttgagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattaaaagcatgtgtcaccatgctctgttctaaccccggggaaattttgagccc 320

                                                                       
Query: 121 aattctttgaagggttctgaaactagaggcagttaataagattgcatttaacaaagatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattctttgaagggttctgaaactagaggcagttaataagattgcatttaacaaagatca 380

                                                                       
Query: 181 acacttgcaatagaatgttataatttctaaaatgtccctaacattaataaatgtgaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 acacttgcaatagaatgttataatttctaaaatgtccctaacattaatagatgtgaaata 440

                                                        
Query: 241 ttttgagagatctctggcctcaaaaatacctactatcctctaata 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgagagatctctggcctcaaaaatacctactatcctctaata 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)