BAC Information

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BAC

Clone NameMSMg01-209B15
Chromosome14 (Build37)
Map Location 112,461,381 - 112,461,665
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043494, Slitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209B15.T7 (MSMg01no209_b15.b1)MSMg01-209B15.TJ (MSMg01no209_b15.g1)
ACCAG391758AG391759
length814743
length of high quality
(start - end)
293 (126 - 418)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no209_b15.b1 PHD_FILE: MSMg01no209_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:07 2005CHROMAT_FILE: MSMg01no209_b15.g1 PHD_FILE: MSMg01no209_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTCTTCTTTTTTTGATTTACCTTTCCCCNNCNCCCCTCGCNCCCNNC
CCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCATAATTTTCTCATTTCTTTCTTTATTTCTTCCCTGACTA
GGTTATCATTGAGTAGAGAGTTGTTCCCCTCCATGGGTATGTGTGCTTTC
TGTTGTTTTTGTTGTTATTGAAGTCTAGTCTTAGTCCATAGTGATCCCAT
AGGATGCATGGGATTACTTCAATCTTCTTGTATCTATTAAGACTTATTTT
GTGACCAATTATATTGTCAGCTTTGAAGAATGTACCATGAGGTGCTGAAA
AGAAGGCATAGTTTTTTGGTTTAAGTGATATATGTATAATTGTTAAATTC
ATTTGGCTCATAACCTCTATTATTTTCACCATGTCTCTTAAATTTCTGTT
TTAATGACCTGTCTATTAGAGAGCCGAAATCTCACACAGATATTATGGGG
ATTTTATAGTGTTAAAGACTTCCCACTTGGCTGTGGTGGTACACACCTTT
AATCCCAGCATCTGGTAGACATAGGTAGGCATATTTCTGAGTTTGAGGAC
AGCCTGTTTTACATAGTGAGTTCTAGGATACATATAAACCCTGTCTTGAA
ATACCTTATAATAACATAAGTACTATAGAATGAATGAAAGATCGAATGAA
AGAATGTACGACCGAAAGATCTAATTAATGATTTTATTGATAGACGATTG
TAACAATGTACTACCTCTTTTTACCTTCTTATCCCCACCATTTCTATTTA
TTTTTACAACAGTT
ACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTGGATATTCTATGAAAGATCAG
TTACCCTTTATTCACACGAATTAACCATTGTACAAGTAACAAATGAAACC
CCATTTCTTCTGGGGTTTTATTAAATTCTTAATTTTGTTCTTGAAGAAAA
ACCCAACACAACAAAAACCACCTTGGTGATTAGCTTAAAATCCCATCAAA
CCAGGTAGTAATATATACAGTGTCTGTTTTCCTGTGAGAAATTCTTAAGT
CATGAATGGCATGGTAATGTTCTTTTACCAAAATTTATGGTAAAGATATT
GAAATTTCTATATAGCTCCGTTCCGAAACTGNGCCGTAATTAAAGATTAA
ATGTGTTTCACCGTGTTGCCCCTATTTATAAGAAACCAAAAAACAATTTC
CAAATGATCTTAGAATGTGTGAGCAGTGCATAAAGTAGATTTTCTTACTC
TGTAATAACATATTTTCATATGGCATATTCTCTGGATATAAAAAGTTAGA
GAGGCAATTTCAAATATCATTTCTTCCATCCTGTCTTCTTATTGAACAAG
CGTGTATGTTTCGATTTTTTTATACTTTCTTGAGGACAGTAATAGCTCTT
TATGTCTGTGACAATATATTGCACAAGCAAAGCAATAATACTTACCGATA
GCTCACACATTAGGATTGCTGAGTTTTCAAGGGATTATTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_b15.g1 MSMg01no209_b15.g1 CHROMAT_FILE:
MSMg01no209_b15.g1 PHD_FILE: MSMg01no209_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:07 2005
         (286 letters)



>mm_chr14_112461181_112461866
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%), Gaps = 2/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggatattctatgaaagatcagttaccctttattcacacgaattaaccattgtaca- 59
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| 
Sbjct: 201 atttggatattctatgaaagatcagttaccctttattcacacgaattaagtattgtacat 260

                                                                       
Query: 60  agtaacaaatgaaaccccatttcttctggggttttattaaattcttaattttgttcttga 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 a-taacaaatgaaaccccatttcttctggggttttattaaattcttaattttgttcttga 319

                                                                       
Query: 120 agaaaaacccaacacaacaaaaaccaccttggtgattagcttaaaatcccatcaaaccag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaaaaacccaacacaacaaaaaccaccttggtgattagcttaaaatcccatcaaaccag 379

                                                                       
Query: 180 gtagtaatatatacagtgtctgttttcctgtgagaaattcttaagtcatgaatggcatgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtagtaatatatacagtgtctgttttcctgtgagaaattcttaagtcatgaatggcatgg 439

                                                         
Query: 240 taatgttcttttaccaaaatttatggtaaagatattgaaatttcta 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taatgttcttttaccaaaatttatggtaaagatattgaaatttcta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)