BAC Information

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BAC

Clone NameMSMg01-210B14
Chromosome14 (Build37)
Map Location 63,856,077 - 63,856,360
singlet/doubletsinglet
Overlap geneGata4
Upstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2
Downstream geneLOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210B14.T7 (MSMg01no210_b14.b1)MSMg01-210B14.TJ (MSMg01no210_b14.g1)
ACCAG392357AG392358
length762726
length of high quality
(start - end)
317 (36 - 352)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no210_b14.b1 PHD_FILE: MSMg01no210_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:30 2005CHROMAT_FILE: MSMg01no210_b14.g1 PHD_FILE: MSMg01no210_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAA
TGCTCGAGTCTCTCTCACAAAGCAGACAGTGTAGTGGTTTCATAGAGCTG
TGGTTCTCAACCTGTGGGTTGAGATCCATTTGGGGGTTGCATATCAAATA
CCCTACATATCAGAAATTTTCATTAAAATTCATAACAATAGCAAAATAAC
AGTTATAAAATAGCAACAAAATAATTTTATGGTTGGGGGTCACAAAATGA
GGAACTGTATTAAAGAGTCACAGCATTAGGCAGGTAGAGAACCACTCTCA
TAAAGCCTTCGGACTTCCTCCTGTATGAGTTAAATCATCTCTGCATTGCT
TGTTTTTCTCCCCCCCCCCCCCTACGCAAGTATTTGTCACACTATATTGT
TATCCCCCCCCTCTTTAAAAATCAATGTGTGCTTCAGCACGACTCCATTG
CGCGTGATAGTGTGCGCGTGATTGTATGTATCAGTCAACGCTCTACGCAG
CGTACGCACCCTCCTCCTCCTTTTTGTCCGTCTTTCTTTCTATCGATTAC
TTTTAAACATATCTCCGCATATTCCAACTTCTTTTTTCCCTCGCCTCAAT
ACTTTGTATTTTCCGTATTTTTCTACGGGCTACGATATCGACCATTTTTC
ATACTTCTTGCCTTTGTGTCGCTCTATTTATCCATTATTACTTGCGCACC
TTCATCGCTGTACTGGCTTCGACAACGCTATAACCGCCATCAACTGCCTC
TTTTACCGCTTG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGACCTTACTGAGACGGGTACAG
AGTCTTACTCATACATAGGTGCCTGGCACATGCTGGGCAAGTAGCAAATA
TTTGAGTAAAGATCTGGGAGGTAATTGCCCCAGGACTCTGCCCTGCCCTG
GTCAAGCCGCACAGAATGACTGCCTTCGTCCTTTAAGAAGCAAATTAGAA
CTGGGTGTGGTGGCATACACCTGTGACCCAGCACTCAGGAGGCTGAGGCA
GGAGAATAGAGAGCTCAAGGCTAGTCTGAGCTCCATAGCAATCCCCTGCT
TAAAGAAGAATTTTTTAAGCCCACACACACCTTCGAGACTTGGAGAAGAG
TGAGCAGAACTGGCGAGCACACCACAAACCTAGGACCACTGCAGACAGCT
GGGCTCTGAGCCTGTGCTGCTCTCTGTGAACAGGTGCTAGAGTTAATAAT
ACTGGAGTGTGTGGCTATGGCTGTCACAAAGTGTGGTGCACACAGATCGT
GGCTTGTCTTCGTGTTTGAATGGGGTCTGGAGGTCCAGCTTCCATGCAGG
CTGCATGCTCTGCTGCCAAGACAGCTAGCCATGCCTAGTTCTTACAACTT
CAGGGCGGCGCATGTGCACTGTGAACTTCCTGTAGCCCATAAAAACCCGC
ATCTCTTTTTAACGGACACAATGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_b14.g1 MSMg01no210_b14.g1 CHROMAT_FILE:
MSMg01no210_b14.g1 PHD_FILE: MSMg01no210_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:30 2005
         (284 letters)



>mm_chr14_63855988_63856671
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgaccttactgagacgggtacagagtcttactcatacataggtgcctggcacatgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgtgaccttactgagacgggtacagagtcttactcatacataggtgcctggcacatgctg 314

                                                                       
Query: 61  ggcaagtagcaaatatttgagtaaagatctgggaggtaattgccccaggactctgccctg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggcaagtagcaaatgtttgagtaaagatctgggaggtaattgccccaggactctgccctg 254

                                                                       
Query: 121 ccctggtcaagccgcacagaatgactgccttcgtcctttaagaagcaaattagaactggg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ccctggtcaagccgcacagaacgactgccttcgtcctttaagaagcaaattagaactggg 194

                                                                       
Query: 181 tgtggtggcatacacctgtgacccagcactcaggaggctgaggcaggagaatagagagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgtggtggcatacacctgtgacccagcactcaggaggctgaggcaggagaatagagagct 134

                                                       
Query: 241 caaggctagtctgagctccatagcaatcccctgcttaaagaaga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 caaggctagtctgagctccatagcaatcccctgcttaaagaaga 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)