BAC Information

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BAC

Clone NameMSMg01-212K03
Chromosome14 (Build37)
Map Location 52,731,670 - 52,731,950
singlet/doubletsinglet
Overlap geneRpgrip1
Upstream geneGm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
Downstream geneSupt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212K03.T7 (MSMg01no212_k03.b1)MSMg01-212K03.TJ (MSMg01no212_k03.g1)
ACCAG393914AG393915
length755715
length of high quality
(start - end)		---281 (72 - 352)
definitionCHROMAT_FILE: MSMg01no212_k03.b1 PHD_FILE: MSMg01no212_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:27 2005CHROMAT_FILE: MSMg01no212_k03.g1 PHD_FILE: MSMg01no212_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCCGCTATANGAGTGCCATTTCGAACCGCCCCGCGGAANC
CGGGATTACTGGAGNNGAGGGAGAANNGNNGANNGGAAAAANAAAAAAAA
AAAATTTTTTCCACAGAAAGGGGAGGAAAAGGAAGAAAAGGAAGAANAAA
GAAGAAGAAAGGAGAGGGAAAAGAGGAAAAAAGGGGGNAGAGGGAAAAGG
AAGAAGGAGAGAGAAAAAAAAGGANAGGGAAGGAAAAAAGGTTTTTTAAG
AGAGGGTGGNAATAGATATGGATGAGTTTAGTATGTGAGTTTAAGGANAG
AAAGTTTTTGTATTTTGGAGAAAGGAAAGGAAAAGGGGAGGGGAGAATTT
TTCACACCCCCCATAGGGAGGGTGAGAGAAAGGTTGGGGGAGGGACTCTC
ATAACAAAGCTAGAGATTAAAGCTTGCCCTTCTAGCCATTTAAGGACACC
TTAATGGAATTATCTGACTTGAACTCCGAAGAGGACCATGGGTCTGGAAG
GGGTGACAAGAAAAAAGAGGTACTACCTACCTTTCATCCAATGCAAACTG
TGAAAACACAGAATAAACGTAGCACGACATTCTCGAAAAATGTCACTAAG
CACTCTCAAGGTGGTCAGACTCTAGACTTGATAGTAAACCAAATTGACGA
CAAGGCATGATTATTTTTTTTTTAAACCCGGGACGCGAACAAGCATGGCG
GCCACGACGCCAGACAATGAATATTTATGAAAACGCCTGATTTTGACTAT
AGGTC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCAATCAGTGAAGACGTCCATATCTAG
GCACTGGATTTACCTACCTTTCAACAGAGGACTCGAATCTGTGTCTCTAA
CTGGCAGATCCTCTGGCATATATTCTAGTAGATGCTGCATCACCTCAATG
ATCAGGCTGTAAGAGAGCCCAGAAGACAGTGAGTAAAGGAAAAGCCTTCA
TGAAATTATAACTGTGGACTGGACTGTCTTCTGCAGGAGCTCCCTAAATT
GCAGTAGGAATTCCCCAGGACTTTGTGATAGTATTTGACACATCATACTT
ATTNATGNGTTCGCTGTACAAAACCCCAAGGTCATGCACTCAGTGATAAC
ATGGCCTGGAACTCACTTCATCTTTGCCTCCCACGTGCTGGGATTAAAGG
ATTGCACCGATAGACTCATCTTTTATAGTTTGTGAAATATGGCGGGCCTA
TGCCCTGAGTGCCCCTTTGGGAACACAAGAGTGAATATGGCTGCCTTGCT
TCGGTTTGGAGGAAATCCATAAACAAGCATCTCTTTGCTCTGATCATAGG
AAGTATGACCAGCCTTCAGGCCAGTTTTATATACCTAGTTAGACTCTGTT
TAAAAATAATGATTTAATCTGCCCGCTAATGGTGCCATAAACTTCAATTC
CATCACTCTTTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_k03.g1 MSMg01no212_k03.g1 CHROMAT_FILE:
MSMg01no212_k03.g1 PHD_FILE: MSMg01no212_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:27 2005
         (281 letters)



>mm_chr14_52731470_52732150
          Length = 681

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaatcagtgaagacgtccatatctaggcactggatttacctacctttcaacagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctcaatcagtgaagacgtccatatctaggcactggatttacctacctttcaacagagga 422

                                                                       
Query: 61  ctcgaatctgtgtctctaactggcagatcctctggcatatattctagtagatgctgcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctcgaatctgtgtctctaactggcagatcctctggcatatattctagtagatgctgcatc 362

                                                                       
Query: 121 acctcaatgatcaggctgtaagagagcccagaagacagtgagtaaaggaaaagccttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acctcaatgatcaggctgtaagagagcccagaagacagtgagtaaaggaaaagccttcat 302

                                                                       
Query: 181 gaaattataactgtggactggactgtcttctgcaggagctccctaaattgcagtaggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaattataactgtggactggactgtcttctgcaggagctccctaaattgcagtaggaat 242

                                                    
Query: 241 tccccaggactttgtgatagtatttgacacatcatacttat 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tccccaggactttgtgatagtatttgacacatcatacttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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