BAC Information

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BAC

Clone NameMSMg01-213P18
Chromosome14 (Build37)
Map Location 73,279,044 - 73,279,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneLOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213P18.T7 (MSMg01no213_p18.b1)MSMg01-213P18.TJ (MSMg01no213_p18.g1)
ACCAG394795AG394796
length739739
length of high quality
(start - end)
326 (34 - 359)362 (65 - 426)
definitionCHROMAT_FILE: MSMg01no213_p18.b1 PHD_FILE: MSMg01no213_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:10 2005CHROMAT_FILE: MSMg01no213_p18.g1 PHD_FILE: MSMg01no213_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCGGAATTCAGTAAA
ATTCTTCACATCTTGCATCTTTTCAGATGAAGTGGTTAAAACTCTGTAGC
TGACAGAGTCCTGCAGCATGCAGCAACTAGAAGCGTCTTTGCCTGGATTC
TCATGCTGAGCTTGGGCTGAGAATCCAGTCAAACTCAGATCCAAGGTCAT
GTGTGTTCTGCATACCTACCTCTTAGAATGAGAATCAAGGACCCTCTTGA
TCTGTCAGTGCTCATGTAAAGTGTAGCATCCCATTTTACAAATTGGATCT
CAGAATACACTGTAAATTAGTTGCTTACTTCCAGTTCCAACAATCCCGTG
CAATGGTCTCTTTTTCTAACCCCGCCCCCGCTGAATAATTAACATCCCAA
AGATCCTCGTGTCCCACCACGGGAATCCTGAGAATATGCTACCCTACATG
GCAAAGAATGCTTTGTAGTTGTGATAAGATGCATTATCTTGAAATGGAGA
TAACATAAGTCATCCTGATGGGATCAATGTAATTATGACTAGTTCTTATA
TCAGGAGGCAGAAGGTTGTAACTAAAAGGAGATCCAGCAATAGATGCCTG
AGACTGGAATGGTTAGAGGAAGGGGGGTTACAGCCAAACAGTGCAGGTGG
CCTCTAGAGGCTGAAGGTTTCAAAATAAACAGCCACTTTCTTCTGAAGCT
GTATAAGGAGCCAGCCTGTGTGACCCTGACTTTATGTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCACTTTTTAATAGGGTT
ATTTGGTTCTCTGGAGTTTAACTTCTTGAGTTCTTTGTATTGTTCTTTGT
ATCTTTATATTGGATATTAGCCCTCTATCGGATATAGGATTGATAAAGCT
CTTTTCCCAATTGGTTGGTTGCCGTTTTGTCCTATTGACAGTGTCCATTG
TCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCTATTGTTGAT
TGTAGAGCATAAGCCATCAATGTTCTGTTCAGGAAAATTTCCCCTGTGCC
CATATTTTCTATTTTTCTTCCCCACTCCCCTTTCTATTAGTTTCAGTGTT
TTTGGTTTTATGCGCCCCCCCTTGATCCACTTGGACTTGAGCTTTGTAAA
AGGAGATAAGAATGGATCAATTTGCATTCTTCTATATGCTGACTGCCAGT
TGAACCAGCACCATTTGTTGAAAATACTGTCTTTTTCCCCACTGGATGGT
TTTTGCTCCTTTGTCAAAGATCAAATAACCATAGGTGTGTGGGTTCTTCT
GGGCCTTCAATTACATTCCATTGATCTACCTACCTGTCTCTGTACCAGGG
CTACATAGTTTTTATTCACTATTTCTTTGTACTACAGTTTGAGGTCAGGG
ATGATGATTCCCCCCGATGCTCTTTTATTGTTGAGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_p18.b1 MSMg01no213_p18.b1 CHROMAT_FILE:
MSMg01no213_p18.b1 PHD_FILE: MSMg01no213_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:10 2005
         (326 letters)



>mm_chr14_73278840_73279567
          Length = 728

 Score =  569 bits (294), Expect = e-166
 Identities = 316/324 (97%), Gaps = 2/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcagtaaaattcttcacatcttgcatcttttcagatgaagtggttaaaactctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggaattcagtaaaattcttcacatcttgcatcttttcagatgaagtggttaaaactctgt 469

                                                                       
Query: 65  agctgac--agagtcctgcagcatgcagcaactagaagcgtctttgcctggattctcatg 122
           |||||||  |||||||||||||||||||||| ||| ||| |||||||||| |||||||||
Sbjct: 468 agctgacaaagagtcctgcagcatgcagcaaataggagcatctttgcctgaattctcatg 409

                                                                       
Query: 123 ctgagcttgggctgagaatccagtcaaactcagatccaaggtcatgtgtgttctgcatac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 408 ctgagcttgggctgagaatccagtcaaactcagatccaaggtcatgtgtgttctatatac 349

                                                                       
Query: 183 ctacctcttagaatgagaatcaaggaccctcttgatctgtcagtgctcatgtaaagtgta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctacctcttagaatgagaatcaaggaccctcttgatctgtcagtgctcatgtaaagtgta 289

                                                                       
Query: 243 gcatcccattttacaaattggatctcagaatacactgtaaattagttgcttacttccagt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gcatcccattttacaaattggatctcagaatacactgtaaattagttgcttacttccagt 229

                                   
Query: 303 tccaacaatcccgtgcaatggtct 326
           ||||||||||||||||||||||||
Sbjct: 228 tccaacaatcccgtgcaatggtct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 728
Length adjustment: 9
Effective length of query: 317
Effective length of database: 719
Effective search space:   227923
Effective search space used:   227923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)