BAC Information

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BAC

Clone NameMSMg01-214F06
Chromosome14 (Build37)
Map Location 17,264,399 - 17,264,708
singlet/doubletsinglet
Overlap geneRarb
Upstream geneLrrc3b, LOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214F06.T7 (MSMg01no214_f06.b1)MSMg01-214F06.TJ (MSMg01no214_f06.g1)
ACCAG395015AG395016
length730733
length of high quality
(start - end)
319 (45 - 363)656 (78 - 733)
definitionCHROMAT_FILE: MSMg01no214_f06.b1 PHD_FILE: MSMg01no214_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:37 2005CHROMAT_FILE: MSMg01no214_f06.g1 PHD_FILE: MSMg01no214_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAAGGACATGAACCCTTGACCCCAAGTTCAAGTGGGAATATAGCA
GAGCACAGTCCCAGCGTGTCCCCCAGCTCAGTGGAGAACAGTGGAGTCAG
TCAGTCACCACTGCTGCAGTGAGACATTTCCAGCTGTTGCAGACATTCCC
CAGGACCTTCAGTTCCAGATTGAAAATGCAAGGAAAACATTTTTACTGCT
GCTTAGTTTTTGAACTGAAATATGTTAAACTCAAAAAGGACCAAGAAGTT
TTCATATGTATCAATATATATTCCTTACTGTATAACTTCCCTAGAAATAC
AAACTTTTTTTATTCTCACCCCCCCCCATTTCATGCCACCAGAATCTAGT
TTAAAGCTTCTACTTTCCTCTCTGAATAGTCAAGATGCATGGCAAAGACC
CAGTTGAGATGATTTAGCCCTGGTTAAGTTTCTGAAGACTTTGTACATAT
AGAAGTACGGCTCTGTTCTTTCTATACTGTATGTTGGTGCTTTCTTTTGT
CTTGCATACTCAATAACCAAGACACCGAGGTTGTGGAGTAAACCACTGTA
CATCCACTGTACGTCCTGCTTTCATGAATAACCAGGCCTCACGGTAAGGA
ACCAGGGCCTCTGTACAGTACAAGATGACACTAAAGACACTCTGGTTTAA
GTAGTGTGGAAGCTTCTCCTTGCTTTTTGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAGCTCTGTACCCCATTT
TTAATGGGGTTATTTGATTTTCTGGAGTCCATCTTCTTGAGTTCTTTGTA
TATAGTGGATAATAGCCCCCAGTCTTATTTAGGGTTGGTTAAGAACCTTT
CCCAATCTGTTGGTGGTCTTTTTGTCTTAATGACAGTTTCTTTACCCTTA
CAGAAGCTTTGCAGTTTTATGAGGTCCCATTTGTTGGTTCTGGATCTTAC
AGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTCCCCTGTACCCATTTG
TTCGAGGTTTTCTACGACTTTCTCCTCTATAAATGTCATTGTCTCTAGTT
TTATGTGGAGTTCCTTGATCCACTTAAAATTGAGCTTTGTACAAGGAGAT
AAGAATGGATCAATCCCCATTCTTCTACAAGATAACCTCTAGTTGTGCCA
GCACCATTTGTTGAAAATGCTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT
TGTTTTGTTTTGTTTTTTTCCCCAGTGGATGGCTTTAGCTCCCTTGTCAA
AGATCAAGTGACTATCCGTGTGTGGGTTAATTTCTGGATCTTCATTTCTA
TTCCATTGATCTACCTGTCTGTCATTGTACCAGTAGCATACAGTTTTATT
CATTTATTTATTTTTATCACAATTGCTCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_f06.b1 MSMg01no214_f06.b1 CHROMAT_FILE:
MSMg01no214_f06.b1 PHD_FILE: MSMg01no214_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:37 2005
         (319 letters)



>mm_chr14_17264195_17264913
          Length = 719

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaaggacatgaacccttgaccccaagttcaagtgggaatatagcagagcacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctgaaggacatgaacccttgaccccaagttcaagtgggaatatagcagagcacag 455

                                                                       
Query: 65  tcccagcgtgtcccccagctcagtggagaacagtggagtcagtcagtcaccactgctgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcccagcgtgtcccccagctcagtggagaacagtggagtcagtcagtcaccactgctgca 395

                                                                       
Query: 125 gtgagacatttccagctgttgcagacattccccaggaccttcagttccagattgaaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtgagacatttccagctgttgcagacattccccaggaccttcagttccagattgaaaatg 335

                                                                       
Query: 185 caaggaaaacatttttactgctgcttagtttttgaactgaaatatgttaaactcaaaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caaggaaaacatttttactgctgcttagtttttgaactgaaatatgttaaactcaaaaag 275

                                                                       
Query: 245 gaccaagaagttttcatatgtatcaatatatattccttactgtataacttccctagaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaccaagaagttttcatatgtatcaatatatattccttactgtataacttccctagaaat 215

                     
Query: 305 acaaactttt 314
           ||||||||||
Sbjct: 214 acaaactttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)