BAC Information

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BAC

Clone NameMSMg01-214G21
Chromosome14 (Build37)
Map Location 93,952,801 - 93,953,369
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214G21.T7 (MSMg01no214_g21.b1)MSMg01-214G21.TJ (MSMg01no214_g21.g1)
ACCAG395082AG395083
length690719
length of high quality
(start - end)
291 (50 - 340)569 (76 - 644)
definitionCHROMAT_FILE: MSMg01no214_g21.b1 PHD_FILE: MSMg01no214_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:45 2005CHROMAT_FILE: MSMg01no214_g21.g1 PHD_FILE: MSMg01no214_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTACTATTTTTCCGAGGGGGGCGGAATTCTATCCATGGTACGNTATCAC
TGAACTTGACTTCAACCCCTACTGCATCCACTGAACTAACTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCCTATTTTAAGTAGTCTCTCTACTTTTTTCCTTTTTCTGAGCTGT
TCTCCTGGGAGTTGGGCATATCCTATATCATATTTTTGCTGCCGAATCTT
TCTCTGTCTCATCACTTTGCCTGACACTCAACTAGAAGTCACTTTCTAGA
TTGGTTGCTTCCTTCAACAAACTAACTTTACCATCATTGTTAGCCATCAC
AGGTGTGTATATTAAATGTGTGTCTGTATCTCGCCTAGGCCATACAGTAA
TTCTGGGTGTCCCCACATTCTGGCAGGGTCATATCTTTAGATGTGATCAT
TTGGCAGACCAGTCATATTACTGGATTAAAGTTCCTCTACATCAAATTCA
TGGGCTTTTTTGAGGTGGATGTGGCTATTTCACACCATCACAGATGTTAT
GCCAATGACAATTTAAATTACTTAAATAAACTCATTTCTTTTGTCAAATC
TTGGGAACCTAGTTTTATAAGATCAAGCCATCAGCAACTTTTGTTCCGTT
TATAGCTTTCTTTGAAGGTGCAGACAAATATAATCTTCTG
CCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGAACTCTGCACATCAGAGTT
AATTCTAAAACCATATGCTTGGTCTGCATTAATCACAACAGCATGCAACT
TCATTCAATTTATAAGTATTCATGAAGCAGCAAGATCTACATTTCATTCT
CCCAGTGTGGTAATATTTATATTCATTTTGATGGTATGGTTTCTATGTTC
ACTCAAAAAAATATGGGCTTAGATCTTATTTATTTTTTGGAAATTTCTGT
TTTGGTTGTTTTGTTACATCTTCGGATGCATCAGAAAAAAAAGGCACTGT
GGCTGTCACCTGCTTGAAAGGCTCTTTGTGTACGCCAATCTCCCCACGAG
CAGCTGTATCACAGCTGTCATTTTGACTGGTAAAGATGTCTTTGGCTGAT
AAGTCTCTGCCTGTGGCACACAGAGTGACTTCAAACAACTAATTAGCAGG
AACTAGGCCACCTCAAGGTTTGATGCTGTCCATCAAGGCTGTGACCACTG
CTGACACCATCAGGATATCTGTCAAATATGGCTCTTCCTAAAAATACTAC
CAAGCCCACTCACTCTGTGGTGAAGCTAGAAATGGCACAATGTGTGGAAT
AAGAAGTAAGAGAAAGTGATGGCCAATCTATACAGACTTGAATATTTGGA
AAAAATACTCACTCATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_g21.g1 MSMg01no214_g21.g1 CHROMAT_FILE:
MSMg01no214_g21.g1 PHD_FILE: MSMg01no214_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:45 2005
         (569 letters)



>mm_chr14_93952601_93953569
          Length = 969

 Score = 1100 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagaactctgcacatcagagttaattctaaaaccatatgcttggtctgcattaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagaactctgcacatcagagttaattctaaaaccatatgcttggtctgcattaatca 260

                                                                       
Query: 61  caacagcatgcaacttcattcaatttataagtattcatgaagcagcaagatctacatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagcatgcaacttcattcaatttataagtattcatgaagcagcaagatctacatttc 320

                                                                       
Query: 121 attctcccagtgtggtaatatttatattcattttgatggtatggtttctatgttcactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctcccagtgtggtaatatttatattcattttgatggtatggtttctatgttcactca 380

                                                                       
Query: 181 aaaaaatatgggcttagatcttatttattttttggaaatttctgttttggttgttttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaatatgggcttagatcttatttattttttggaaatttctgttttggttgttttgtt 440

                                                                       
Query: 241 acatcttcggatgcatcagaaaaaaaaggcactgtggctgtcacctgcttgaaaggctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatcttcggatgcatcagaaaaaaaaggcactgtggctgtcacctgcttgaaaggctct 500

                                                                       
Query: 301 ttgtgtacgccaatctccccacgagcagctgtatcacagctgtcattttgactggtaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgtacgccaatctccccacgagcagctgtatcacagctgtcattttgactggtaaag 560

                                                                       
Query: 361 atgtctttggctgataagtctctgcctgtggcacacagagtgacttcaaacaactaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtctttggctgataagtctctgcctgtggcacacagagtgacttcaaacaactaatta 620

                                                                       
Query: 421 gcaggaactaggccacctcaaggtttgatgctgtccatcaaggctgtgaccactgctgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaggaactaggccacctcaaggtttgatgctgtccatcaaggctgtgaccactgctgac 680

                                                                       
Query: 481 accatcaggatatctgtcaaatatggctcttcctaaaaatactaccaagcccactcactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accatcaggatatctgtcaaatatggctcttcctaaaaatactaccaagcccactcactc 740

                                        
Query: 541 tgtggtgaagctagaaatggcacaatgtg 569
           |||||||||||||||||||||||||||||
Sbjct: 741 tgtggtgaagctagaaatggcacaatgtg 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)