BAC Information

Click to search

BAC

Clone NameMSMg01-215I14
Chromosome14 (Build37)
Map Location 75,904,489 - 75,905,023
singlet/doubletsinglet
Overlap geneGm912
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
Downstream geneSpert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215I14.T7 (MSMg01no215_i14.b1)MSMg01-215I14.TJ (MSMg01no215_i14.g1)
ACCAG395751AG395752
length730724
length of high quality
(start - end)
522 (68 - 589)257 (379 - 635)
definitionCHROMAT_FILE: MSMg01no215_i14.b1 PHD_FILE: MSMg01no215_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:14 2005CHROMAT_FILE: MSMg01no215_i14.g1 PHD_FILE: MSMg01no215_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATCCTCGCAATGGGAAGTTCCTTAATCTCGTTCCTTCTCACAGT
ATTTAAATTCATTTGTTAGTCCAGAACTTAGCTTTAATTAATAAATTATC
CATTTTTATAGCTGCTCATAATTTTCTACTATTTAGCTTAGTGAGGTTTT
CATGTGCAATTCCAAAGCAGCTTCTCTTACCTCTCTCTCTCTCTCCCTCT
CTCTCTCATTCTCTCTTTCTCTATTTTTAAGTAAGAAGACACAAATACAT
GTGTTTTTCTTCTGGGCCTACTGGTTTTCATACCCCTCTATAATAAGCCT
ATCCTTCCCTCCTCCCCTCCCTTCCTTCTTCTATCCATCAATCTTTCATC
CATCAGTCCCTCTCCCCACCTGTCCATCCATCCCTTTGTCCCTTCCTCCC
TCCACCCCTCTCTCCATCCATCCATCCATCCATCCATTCCTGGGCATTTA
TGTTGAGGTTTGTGAAATCCTGGGGATAAGACAGTGAACAAAGCAAGTGT
GTGTGTTTCCTCTTCTCTAAGAGGTTACTTTTCTCAAAGGGAAGGAAAAT
ATTTTCACTTGAGAGAGAAAGGTCATAGGTTATCTTGGTCAGGTTCTGGC
AGCGCTTTGTGCTGATAATTCAGCAGAATGATGTTGCCTCACCCTGAGGT
TTTATTTGTTGCGCACACACTCTTTGTTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCAGAGAAAATTCAGCATAGCGACACACTATTGGCTTAT
TCAAACATTAACAGAAAGGGCCTCAGGACTTTGTTCTTGTGGGCTGGGGG
CTTATCTTTGCTCACATAGCAACCAGTTGATGTATGACTTTACCCAGCGT
CAAGGGGCAATAGACAGAGGGGAGGTTCTGGCCAGATGGTGTTGACTCAT
ATAATATAGCCCTGCTGGTCCTTGCATACCTTTTCATCTTTACAGTCAAG
ATGTTCTTAGGAATGTTTTATTAACAGCCCTGCCCTGGCATGCCTGGGGG
CTGTTCTGTTTTGTTCTCACTCCCACGCCGGGGCCATGGGCTCCTAAACT
CACAAGTTACAATGCCCCATCTTCCTTCAATGCAAGGAGAGACCCACGGG
AAGGGCGCTCCTTGATGCTTCTGGAAGGAGCTGACCATACTGACACTAGG
ACTTTAGACCTCTAGACTTGAGAGTTATTTTACTTTTATATTTCTCTGAC
CCTTCCAGTGCGTGGTGTTTCCTTACGGCAATCCCAGGAAACTGGAGCAT
CCAGCTGGCTGCCTGTCTGAGTGTTTCCGGAGCACGGAGCCTCCTCATCT
ATTGCTGAATTGTTCTTGCTTTGGGATCAGTTGTAATGATTGTACAAACA
TATGATAGAGGCTGATGTACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_i14.b1 MSMg01no215_i14.b1 CHROMAT_FILE:
MSMg01no215_i14.b1 PHD_FILE: MSMg01no215_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:14 2005
         (522 letters)



>mm_chr14_75904290_75905211
          Length = 922

 Score =  907 bits (469), Expect = 0.0
 Identities = 512/539 (94%), Gaps = 22/539 (4%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaagttccttaatctcgttccttctcacagtatttaaattcatttgttagtccagaact 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 734 ggaagttccttaatctcgttccttctcacagtatttaaattcatttgttagtaaagaact 675

                                                                       
Query: 62  tagctttaattaataaattatccatttttatagctgctcataattttctactatttagct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tagctttaattaataaattatccatttttatagctgctcataattttctactatttagct 615

                                                                       
Query: 122 tagtgaggttttcatgtgcaattccaaagcagcttctcttacctctctctctctctc--- 178
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 614 taatgaggttttcatgtgcaattccaaagcagcttctcttacctctctctctctctctct 555

                                                                       
Query: 179 --------------c-ctctctctctcattctctctttctctatttttaagtaagaagac 223
                         | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctctctctctctctctctctctctctcattctctctttctctatttttaagtaagaagac 495

                                                                       
Query: 224 acaaatacatgtgtttttcttctgggcctactggttttcatacccctctataataagcct 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acaaatacatgtgtttttcttctgggcctactggttttcatacccctctataataagcct 435

                                                                       
Query: 284 atccttccctcctcccctcccttccttcttctatccatcaatctttcatccatcagtccc 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atccttccctcctcccctcccttccttcttctatccatcaatctttcatccatcagtccc 375

                                                                       
Query: 344 tctccccacctgtccatccatccctttgtcccttcctccctccacccctctctccatcca 403
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 374 tctctccatctgtccatccatccctttgtcccttcctccctccacccctctc----tcca 319

                                                                       
Query: 404 tccatccatccatccattcctgggcatttatgttgaggtttgtgaaatcctggggataag 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccatccatccatccattcctgggcatttatgttgaggtttgtgaaatcctggggataag 259

                                                                      
Query: 464 acagtgaacaaagcaagtgtgtgtgtttcctcttctctaagaggttacttttctcaaag 522
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acagtgaacaaagcaagtgtgtgtgtttcctcttctctaagaggttacttttctcaaag 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)