BAC Information

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BAC

Clone NameMSMg01-215O07
Chromosome14 (Build37)
Map Location 92,985,973 - 92,986,259
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215O07.T7 (MSMg01no215_o07.b1)MSMg01-215O07.TJ (MSMg01no215_o07.g1)
ACCAG395978AG395979
length710716
length of high quality
(start - end)
312 (41 - 352)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no215_o07.b1 PHD_FILE: MSMg01no215_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:40 2005CHROMAT_FILE: MSMg01no215_o07.g1 PHD_FILE: MSMg01no215_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGTTCTCTCTAAGACTTTTAACATGAAGGAGTGTTAGATTTTGTTGAAG
GCTTTTTCAGCATCTAATGGGATGATTATATGATTTTTTTTTTCCTTTGA
GTTTGTTTAGTGGATTTCATTGATGTGTTTTTTATATTGAACCATCCCTG
AATCCCTGGGATGAAATCTACTTGATAAACGTAAATGATGTTTTTCATGT
GTTCTTGGATTAAGGTTTTAATAATTTTATTATTTTTGTGTTTATGTTCA
TAGGTAAAATTGATCTTAAGAGCTCTTTCTTTGTTGGGTCTTTGTGTGTT
TTATTTATCACCCCCCCCCCCGCGCCTCATAGAATGAATTAAGTAGTGTT
CCATTTGCTCCCACCCCCGCANAAAAGTTTGAGGAGTATTGGAATTAGCT
AAAAGCAATATAAACTAATAGCCAGCATCAAAATAAATGACGAAAAACTA
GAAGCAATCCCACTAAAACCAGGGACAAGACAAGGTTGCCCACTGTCTCA
CAGTCTATTTAATATCATTCTCAAAGTTCTCGCTAGAGAAGTAAGACAAC
AAAGGGAGATCATAGGGAAATAAACTGGAAAGGAAGAAGTCAAGGTATCA
CTATTTGTAGATAATACGATAGCATATGTATAAGCAACCCCCAAAATTCT
ACCTGAGAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGGAATTTTAAGTGTTTCTTTA
TTGTTGTTGTTGTTATTATTATCCGTGGGTCTCATAATATTTTTATATTT
GTTTTCTTTTAAAAATGTATCTTTAATTTCCAATATTTCCTGTACTGATT
CTTTGCATGGAAATTATGGCATCTAGATATGTGTTTTTATTGGATGTCCG
AGTGTGCAAATGAGTGGGTCTCTGAATCTATACATGTTTCTTGGGCTTTT
GTCCCCTTACGATTGTTTCTTTCCTGTTCTAAAGTGCTTGTTTTTGTTTA
ACTTATTTTATTTTTTTTCACCACTCTCTTTTAAATGGCATTGTTTTCTA
ATGATAAACAGAAAGGCCCACATATGGACTGGATGAAAGGTTATAAGGAA
CTGGAAAAAGTATAGGGAGAAAAAAATAGTAAAAAAAAAGAGATTGTATT
AAAATTTTCATTTTAATTTAGTAATAATAATAATAATAATAATCTGTATT
TATCCAGAGAAGCTGTATATTAACACTTTAAAGTGAGGGTAGTGGTGGTG
GAATATCAAAAAAATTCAGTAAGTTAAAATTTAATAGATAAAGAGATTTC
TTAATGCAAAAAGTTCACAAACTTTTTAACATCTCAAGCAACCATCTCTT
ACTTTTTACTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_o07.g1 MSMg01no215_o07.g1 CHROMAT_FILE:
MSMg01no215_o07.g1 PHD_FILE: MSMg01no215_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:40 2005
         (288 letters)



>mm_chr14_92985951_92986638
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggaattttaagtgtttctttattgttgttgttgttattattatccgtgggtctcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 309 aatggaattttaagtgtttctttattgttgttgttgttattattatatgtgggtctcata 250

                                                                       
Query: 61  atatttttatatttgttttcttttaaaaatgtatctttaatttccaatatttcctgtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atatttttatatttgttttcttttaaaaatgtatctttaatttccaatatttcctgtact 190

                                                                       
Query: 121 gattctttgcatggaaattatggcatctagatatgtgtttttattggatgtccgagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gattctttgcatggaaattatggcatctagatatgtgtttttattggatgtccgagtgtg 130

                                                                       
Query: 181 caaatgagtgggtctctgaatctatacatgtttcttgggcttttgtccccttacgattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 caaatgagtgggtctctgaatctatacatgtttcttgggcttttgtccccttacgattgt 70

                                                          
Query: 241 ttctttcctgttctaaagtgcttgtttttgtttaacttattttattt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ttctttcctgttctaaagtgcttgtttttgtttaacttattttattt 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)