BAC Information

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BAC

Clone NameMSMg01-216H07
Chromosome14 (Build37)
Map Location 81,909,570 - 81,909,802
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216H07.T7 (MSMg01no216_h07.b1)MSMg01-216H07.TJ (MSMg01no216_h07.g1)
ACCAG396319AG396320
length694790
length of high quality
(start - end)
234 (98 - 331)194 (179 - 372)
definitionCHROMAT_FILE: MSMg01no216_h07.b1 PHD_FILE: MSMg01no216_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:28 2005CHROMAT_FILE: MSMg01no216_h07.g1 PHD_FILE: MSMg01no216_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATATCCAGAGGATCCGCGGAATTCCATACTACCTACCATTTTCTCTA
TGCCCTATTCTCATTTACACACACACACACACACACACTTCCCTCCACAA
CTGGTGCACACATGCACTAATCCTTGTTTACTTACCACAGATTCTTACTT
GCTGCATGTACCTTCCTACATCCCTGTCCCCTGGAGGATACCATAGGTTT
TATAATACTGCTTCAAATATATGATTTTATACTTCTAGCTAATTGACAGT
TGGAATATGTTGATACGAAAGAATTGAGATCTTATGCTTCTGTTTTGTTA
TCTAAATCTACCTGGAAATGAGAGATTTTANATGNGATGCATATACANAA
ACTAATATATAATTCTGTAGCAGAGAATGACTAGATTTACAGAAAGAAAA
AAAAAACTCAACTTGGTGCTGAGGAGAATGTAGGTGCTATTGAGCCTTCC
CTGTCCTTTGTCAGTAGATTCCTCTGCTGAAATGCAGCTGTAACTTACAC
ATAATTCCTGCACACCCAGAGGTGAGCTGGCCTTAACAAGGCGTTCAGTC
ATCCTATCCACAATCACTGCTTCTTGCTCCTCCAGTGCCAAAATGCTGCT
CCATTTACACATTCTATGATTGAGTCTGGACTACAGAAAGAGACACACAA
GGGTGCTACCTTTATCCCTCTGAGTTGACACGCACAGTCCTTTG
TTTCCCTTTTCCCACCTTTCTTTTCTCTCCTTCTTTTTAATTTTNNNCTC
CAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATACCAATACTCCAAAAAC
TGTTCCACAAAATTAAAACAGAAGGCACTCTACCCAATTCATTCTACAAG
GCTACAATTACTCTGATACCTAAGCCACACAAAGACTCAATGAAGAAAAA
GAACTTCAGACAAATTTCCCTAATGAATATCCATGCAAAAATACTTGATA
AAATTCTCACAAACCGAATACAAGAGCACATAAAAACGTTCATCCATCAT
GATCAAGTAGGCTTTATCCTAGGGAGGCAGGGATGGTTCAAGATTCAGAA
ACACATCAACATATTTTTTTACCTCACCCCCCTCCTAGACAAAAAAAAAA
AACACTTGATCATCTCATTAGATGCTGAAAAAGGATTTGACAAACTTCGG
CACCCCTTCATGATAAAAGTCTTGGAAAGATCAGTAAACATGGCCCATAC
CTAAACATAGTAAAAGCAATATTCACCGAGTCATTACCATACTTGAACCC
ATATGAAAACAAACTTGAACTTAACCCCCCTTAAAATTCCAGGGATTTAA
TAAAAGGGCTGGCCCCAAATTTCCCCCCCAAATTTAATTCACATTATACC
CAACTCTGTGAATTTCCCCCACCCCCCCCAAAATATTCTTAAACCCCATC
CCAAATTTAGGGTAAGAATTACACAAGCCCTGTTATTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_h07.b1 MSMg01no216_h07.b1 CHROMAT_FILE:
MSMg01no216_h07.b1 PHD_FILE: MSMg01no216_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:28 2005
         (234 letters)



>mm_chr14_81909370_81910003
          Length = 634

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactggtgcacacatgcactaatccttgtttacttaccacagattcttacttgctgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactggtgcacacatgcactaatccttgtttacttaccacagattcttacttgctgcat 260

                                                                       
Query: 61  gtaccttcctacatccctgtcccctggaggataccataggttttataatactgcttcaaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaccttcctacatctctgtcccctggaggataccataggttttataatactgcttcaaa 320

                                                                       
Query: 121 tatatgattttatacttctagctaattgacagttggaatatgttgatacgaaagaattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatgattttatacttctagctaattgacagttggaatatgttgatacgaaagaattga 380

                                                                
Query: 181 gatcttatgcttctgttttgttatctaaatctacctggaaatgagagatttta 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcttatgcttctgttttgttatctaaatctacctggaaatgagagatttta 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)