Query= MSMg01no231_m08.b1 MSMg01no231_m08.b1 CHROMAT_FILE:
MSMg01no231_m08.b1 PHD_FILE: MSMg01no231_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:08 2005
(689 letters)
>mm_chr14_116675029_116676117
Length = 1089
Score = 1265 bits (654), Expect = 0.0
Identities = 678/686 (98%)
Strand = Plus / Minus
Query: 4 ggaattcatattaaacacgcatgtagtatcttatcattggcaactcaacataagataaac 63
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 889 ggaattcatattaaacacgcatgtggtatcttatcattggcaactcaacataagataaac 830
Query: 64 attaaagtaaaatacctacaatctgaagaaagccatcctctctacttttctgatgggaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 attaaagtaaaatacctacaatctgaagaaagccatcctctctacttttctgatgggaat 770
Query: 124 gtaaattagtgagagccccagggataatagaatcaggttgaatcttataaactccattaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gtaaattagtgagagccccagggataatagaatcaggttgaatcttataaactccattaa 710
Query: 184 tgtgcttatgctcagttcatgcaattacaatatcagaagcttactgacgtacaggaaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgtgcttatgctcagttcatgcaattacaatatcagaagcttactgacgtacaggaaaat 650
Query: 244 atagtcatatgcaaaatgtgcattaatacttatattcaaaaataaaaataacaataccac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atagtcatatgcaaaatgtgcattaatacttatattcaaaaataaaaataacaataccac 590
Query: 304 ccattatttggataataatgatactcattgcacacatcaatgtaaggaaatgctatataa 363
||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct: 589 ccattatttggataataatgatactcactgtagacatcaatgtaaggaaatgctatataa 530
Query: 364 tcatacaagcaaaaaagaaaagaatttactgatgtgaaagaaagtatgcatcaaaaagca 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcatacaagtaaaaaagaaaagaatttactgatgtgaaagaaagtatgcatcaaaaagca 470
Query: 424 ttacattaaaaaaataaactagactcaaaaaattacataacacatgccccatgcacatgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttacattaaaaaaataaactagactcaaaaaattacataacacatgccccatgcacatgg 410
Query: 484 aagcctggagaatagaaagcacagatcttagaggttcccatgaatgaggcattgtggaag 543
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 409 aatcctggagaatagaaagcacagatattagaggttcccatgaatgaggcattgtggaag 350
Query: 544 gagaaggacaccaaaaatggttccgctaaattgacagtttctattctcactgtacacatg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gagaaggacaccaaaaatggttccgctaaattgacagtttctattctcactgtacacatg 290
Query: 604 ctatgtgaacatcaactagttaaaatgcattgagatacgtaggtagagttagcacatgcc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctatgtgaacatcaactagttaaaatgcattgagatacgtaggtagagttagcacatgcc 230
Query: 664 acttgaacaagttatgctgcaatagg 689
||||||||||| ||||||||||||||
Sbjct: 229 acttgaacaagctatgctgcaatagg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_m08.g1 MSMg01no231_m08.g1 CHROMAT_FILE:
MSMg01no231_m08.g1 PHD_FILE: MSMg01no231_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:08 2005
(611 letters)
>mm_chr14_116584503_116585516
Length = 1014
Score = 1112 bits (575), Expect = 0.0
Identities = 603/614 (98%), Gaps = 3/614 (0%)
Strand = Plus / Plus
Query: 1 caaagtctaagtaaagtaatacattttcatggtaacaagccatatactcctgttgctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtctaagtaaagtaatacattttcatggtaacaagccatatactcctgttgctatt 260
Query: 61 tgtgaaatgatattaaacggtgaaatttggttttactcttcaggtagttttttgtgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaaatgatattaaacggtgaaatttggttttactcttcaggtagttttttgtgccct 320
Query: 121 ttcttcctttctcgagacatgctctcccagaagaagacacagcaaaggttgggtgtggga 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttcttcctttctcgagacatgctctcccagaagaagacatagcaaaggttgggtgtggga 380
Query: 181 gcactatatttctatatattactatatttctgctgtatactaataactccctagattgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcactatatttctatatattactatatttctgctgtatactaataactccctagattgtg 440
Query: 241 atttctcatgtaatattcttaacatgtattttcatagcatttctgataatataaacatta 300
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 441 atttctcatgtaatattcttaacatgtattttcatagcatttctgataagagaaacatta 500
Query: 301 ctagacttattttggtagtgaaaaaaaatagaaactttcagtaacgcagaaaattcccta 360
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ctggatttattttggtagtgaaaaaaaatagaaactttcagtaaggcagaaaattcccta 560
Query: 361 aatactttttgctacccaaaattaattcaattgtctttgaatgaatatttaatatatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatactttttgctacccaaaattaattcaattgtctttgaatgaatatttaatatatgga 620
Query: 421 aaacatcagaagatattgtgtcaacacagtgtactcaataagcctacaactagtggcaga 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 aaacatcagaagatattgtgtcaacacagtgtactcaataagcctacagctagtggcaga 680
Query: 481 aataaaactcanattatatatacgaaaaaaaaa---ctatatgtagttccacttcaacaa 537
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 aataaaactcaaattatatatacgaaaaaaaaaaaactatatgtagttccacttcaacaa 740
Query: 538 gcattttccttgagtatgtgagaaaactcatgaatattatgagatatagggaaatcatgc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcattttccttgagtatgtgagaaaactcatgaatattatgagatatagggaaatcatgc 800
Query: 598 ccagaatacatagt 611
||||||||||||||
Sbjct: 801 ccagaatacatagt 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1014
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1004
Effective search space: 603404
Effective search space used: 603404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
