BAC Information

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BAC

Clone NameMSMg01-232L14
Chromosome14 (Build37)
Map Location 86,649,258 - 86,649,546
singlet/doubletsinglet
Overlap geneEG629815
Upstream geneLOC668603, LOC100043301
Downstream geneLOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3, EG665324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232L14.T7 (MSMg01no232_l14.b1)MSMg01-232L14.TJ (MSMg01no232_l14.g1)
ACCAG399141AG399142
length729724
length of high quality
(start - end)
---289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no232_l14.b1 PHD_FILE: MSMg01no232_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:17 2005CHROMAT_FILE: MSMg01no232_l14.g1 PHD_FILE: MSMg01no232_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGATCTGTGATAAAGGTCAGATACATTAGACAGAAGATGACTTCATGA
ACCCGAAGTTATACCGAGATTACAAACACAATGAGATAATCTGAATGAAC
CAAATGCCCAAGGGCACTGACAATTATCCTAGACATGGTGGGCGAACCAA
GTGCATGCCTTGATCTACTTTATATGTTCCATCTGAGCCTGAGAGCCTAC
ATGTCTGAATGCTGCATAACGCGCACTACACACACATGCTAAGTTTAATG
CATACCTATGCCATACGCACCTGCTGTGTGGAGATTGATCACTACTATTA
TGACCATGTCTGATTTGTTTTGTCTTGCCCGCACTGCGTCAGCTCCCTAA
CTTTATGAATTTACAAGATTCACCCCAATTCCATACACTTTGACAATATT
TTACAATTAATACACAGCCCTTCACATGACTTCTAATAAGGTAAGTGATA
CAGAACTGATACTGCTTGCGACTATCTGTTCCTACTAAACAGAAACTTTG
TTCTTTGCCACGTCTGCCGTGTAACATGTCGTAACAGACTAGAGAACCGT
TCATTATTGTCCCTCCCTGAATCTTGATTTTCTGGTGGAAAAAAAAACCT
TATACCTTACCCTTTAACGTGAAGCTTTTGTCACTTAGCAGACTCCCATG
CAACTAGCTAGTATTACATGTCTATACTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGCTACATCATGCAGACATCTCCTTTG
ATTACTAATACTTCTCAAGACCCCACTCTTTGAAGATGCTCACCCTCACT
ATCTCTAAAGACACTCCAAGGTCAGAAACGCATCACGTTTTCTTCACAGC
TTTGGTCATGCATGACGTGGCAGCCAGGTTTAGTAATAGACAGCTTCTGT
TGAGGATTGAGCACATCTTCAGGCAGAGTGCTTACTCTCGGCTGCATAGG
AGCCTGTTTGAGTTTATTTAAGTACTCATTTTGAAGTTCATTTAGATTCA
TGGAAGATGTGTGAAAATACCCACCCCCACCTCTCATTTATTCCTCGCTT
GCTTCCTAGGAAAGCTCCCCCTTATCTGACCAAATTACGGAGATGAGACT
CGGGAAAAACCACACTGCTACAATAATCTGAACTGCACTGCTCATCCTAA
CACCATGTACCTAGGCTCCTCACTACTGTTATTTGCACAGTGGAGCGTGT
CATTTAACTGATGTTTGCCTTAGTTTCCTCTAATCTGGGATAATCTCATG
GCCTTTCTTTGCCTTTCATATCGTTTGCCCCTTCAAAGAAGGCTGGTGGG
GTTTGATGCTGCTGCTGTTTGCCCGCTGCCCTTTCTGATTGTTCGTTTGT
TAGAATTCTCTCAGCCCGCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_l14.g1 MSMg01no232_l14.g1 CHROMAT_FILE:
MSMg01no232_l14.g1 PHD_FILE: MSMg01no232_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:17 2005
         (289 letters)



>mm_chr14_86649058_86649746
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctacatcatgcagacatctcctttgattactaatacttctcaagaccccactctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctacatcatgcagacatctcctttgattactaatacttctcaagaccccactctttg 260

                                                                       
Query: 61  aagatgctcaccctcactatctctaaagacactccaaggtcagaaacgcatcacgttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatgctcaccctcactatctctaaagacactccaaggtcagaaacgcatcacgttttc 320

                                                                       
Query: 121 ttcacagctttggtcatgcatgacgtggcagccaggtttagtaatagacagcttctgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacagctttggtcatgcatgacgtggcagccaggtttagtaatagacagcttctgttg 380

                                                                       
Query: 181 aggattgagcacatcttcaggcagagtgcttactctcggctgcataggagcctgtttgag 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggattgagcacatcttcagacagagtgcttactctcggctgcataggagcctgtttgag 440

                                                            
Query: 241 tttatttaagtactcattttgaagttcatttagattcatggaagatgtg 289
           ||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttaagcgctcattttgaagttcatttagattcatggaagatgtg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)