BAC Information

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BAC

Clone NameMSMg01-232O22
Chromosome14 (Build37)
Map Location 113,639,096 - 113,639,411
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232O22.T7 (MSMg01no232_o22.b1)MSMg01-232O22.TJ (MSMg01no232_o22.g1)
ACCAG399287AG399288
length760760
length of high quality
(start - end)
323 (40 - 362)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no232_o22.b1 PHD_FILE: MSMg01no232_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:32 2005CHROMAT_FILE: MSMg01no232_o22.g1 PHD_FILE: MSMg01no232_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CAATTTTCATATAATGCAGATATACAAATCATATTATTAAAGGAGGTACT
TACTATAACTACATGTTGTTGATTATACATATGTACATGAATGTAACTTG
CATCCCTTATTTTTTTTATGTATGCCATTGGAAAATGTGAGACCAATCCA
CTTAATACTTCAGTATTGATTGCAATCAACTTTAGTAAATCTAATTAAAT
ATATAAATTTTATTTTTAGACATACTGTATGAAGTGCTTTCTCTGAATTC
AATATACTCCAAAAAAGCCACATGGAAAGAAAATACATTATTTAATGAAA
TTTTCATAATTTTTTATGCCCCCCCCCCCCCACAAACCATTTGAACAAAG
TAAAGCCTTCCAAACACTAAGTCATATCATAGTGTATAATGAACATTTTT
TTTTGCATAAAACAAACGTGTTTAAAATGCACAGGAGAAATGAATGCTCA
GAGCTTGTGGGAGTGGCTAAACAATGACTGTTCTAATCTGAAGCCCTGGC
CACTAGAGTGAGCTTATAACCTATACCCGACCCTGCGTGGAGGCCAGGAT
CTGGAAGCTGGATTGCTCTGAGCCCTAGGATCGTACCAAACAACTCGTTG
TGAGATGCTTCCTAATAACATTCTCCTGTATTCATTCATAGGTCAGTGCC
TAACCCAGTCATCATCAGACATGATGGGAGCAGGTGGAGAGACCCACACC
AATCATTAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGACCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTC
TGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGTTTATATACCCCCACCACGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAACA
CATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCCTCC
TTTAGAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_o22.b1 MSMg01no232_o22.b1 CHROMAT_FILE:
MSMg01no232_o22.b1 PHD_FILE: MSMg01no232_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:32 2005
         (323 letters)



>mm_chr14_113639010_113639732
          Length = 723

 Score =  565 bits (292), Expect = e-165
 Identities = 310/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaattttcatataatgcagatatacaaatcatattattaaaggaggtacttac 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 402 gaattcccaattttcatataatgcagacatacaaatcatattattaaaggaggtacttac 343

                                                                       
Query: 65  tataactacatgttgttgattatacatatgtacatgaatgtaacttgcatcccttatttt 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 342 tataactacatgttgttgattacacatatgtacatgaatgtaacttgcatcccttatttt 283

                                                                       
Query: 125 ttttatgtatgccattggaaaatgtgagaccaatccacttaatacttcagtattgattgc 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttttatgtatgccattggaaagtgtgagaccaatccacttaatacttcagtattgattgc 223

                                                                       
Query: 185 aatcaactttagtaaatctaattaaatatataaattttatttttagacatactgtatgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aatcaactttagtaaatctaattaaatatataaattttatttttagacatactgtatgaa 163

                                                                       
Query: 245 gtgctttctctgaattcaatatactccaaaaaagccacatggaaagaaaatacattattt 304
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct: 162 gtgctttctctgaattcaatatactccaaaaaagccacgtggaatgaaaatacataattt 103

                           
Query: 305 aatgaaattttcataa 320
           ||||||||||||||||
Sbjct: 102 aatgaaattttcataa 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)