BAC Information

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BAC

Clone NameMSMg01-233B16
Chromosome14 (Build37)
Map Location 51,885,123 - 51,885,431
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11
Downstream geneLOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233B16.T7 (MSMg01no233_b16.b1)MSMg01-233B16.TJ (MSMg01no233_b16.g1)
ACCAG399408AG399409
length707729
length of high quality
(start - end)
314 (36 - 349)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no233_b16.b1 PHD_FILE: MSMg01no233_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:45 2005CHROMAT_FILE: MSMg01no233_b16.g1 PHD_FILE: MSMg01no233_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGT
TTCTCCCTGGGCACTCTTGCCGGGCCCAAATAGTTAAGTTCTGCTCCCAT
TAGCACTATATGTACTGACCCTGTAAATTGCCTGCTGCTATCAGAGGCAA
CAGGTTAGGGTATTGGCTGCTCTCAGAGAAATCAGGGTGGGGGTATCAGC
ATCTATCAGCACAGACCCCAATGGCCATTGCCATCCCTTGCTGCCTTCCT
CACTTTACCTGGATGTCAAGCTGGCATTCAACATTAACTTCTATTTTAAC
TACTTCACCTGTGTATGGTTGAAACTAGAATGCCAAATCGGAAGTGGCCC
TGTTTTATAAATCCCCCCCCCCCCCCAGAACAGATAACTAAGAATAGAAA
AGTAAGCGAGCCACTCTCAGCAGAGAGAGGTGTCAGGAGGTTTCAAAAGT
ATAGCTGAAGCTGAAGGGGCAGTTTAAGGGCCATACTCTGAAGTGAGGTT
ATCAAACCTTCCCATGTAGCCTATTTAGACAGGACCATGGATCTAGGAAT
GAAAGAGTAGATGCAGTCTGTCCTACTTATCAGCTGCCCTGCTGTGGGTA
CAAGAACTTCATTCCTGGGAGAAGCTTGGTTGGATTCTAGATTCTTGATT
CCCAAAAAAGATTTTTCCTGTGCAGCCATACTGTAAAGCTGGTCACATCA
GCAAACG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATAGCTGTGCTGCAAAACAGGA
CGTTTCAGGAGCCCCTTGAGGGTCATAATAATCTAAAGAACTCACACTAT
TTTATCTCTGTAGCATTCTGCAATTGCTGTTATTCAAAATCATTTTATCA
GAGTTAGAATGAGCCTAAATGGGGGTTGGGAGAAATGAGGACCTTCAGAC
AGGTCTGGTAGTATAAAATCAGGTAGGTGTTTGAGAAGCAAGGTTCAGAA
AGTAGAAAAGAAGTTCCCCTTGACCCAGAGATTCCAAAACCAGGAGTAGA
TATACACAGAGTCTCTAGGGCACATGACGCCTGTAATGGTCCTCAGAGTA
GTCCAGAAGAAGATGATATCCTGATGTCCATCAGCTAAAGAGTGAAAATG
TACTATGTGATGCAGCCCTTTCATGAACTATTGCTCAGTGTGAGATAATC
CATGCAAGTATTTGACCTTCAACTAGTTAGCCTCATATTACTCAAAATAT
CCCTGACACAGTTATATTATTTGAAGAACATTGTTCCATTGGATCCTATT
TATAATGACTTCCTATTTTTCTGGGATCATACCTTTGGACACCAAGTATG
TCATGTAATGATAAAGGGAGCCTCTAATGGAAGGAACTGTTTACTTTGGC
ACAAGAATGAAACAGTGAAGGATAGGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_b16.b1 MSMg01no233_b16.b1 CHROMAT_FILE:
MSMg01no233_b16.b1 PHD_FILE: MSMg01no233_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:45 2005
         (314 letters)



>mm_chr14_51884919_51885631
          Length = 713

 Score =  389 bits (201), Expect = e-112
 Identities = 285/313 (91%), Gaps = 7/313 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagtttctccctgggcactcttgccgggcccaaatagttaagttctgctccca 64
           ||||||| |||||||||||||||||||||| | | |||||||| |||| ||||||| |||
Sbjct: 205 gaattcaaagtttctccctgggcactcttgtcagacccaaataattaaattctgctacca 264

                                                                       
Query: 65  ttagcactat-atgtactgaccctgtaaattgcctgctgctatcagaggcaacaggttag 123
           |||||||||| | ||||  | |||||||||||||||||||||||||||||| ||||| ||
Sbjct: 265 ttagcactatca-gtacaaagcctgtaaattgcctgctgctatcagaggcagcaggtgag 323

                                                                       
Query: 124 ggtattggctgctctcagagaa-atcagggtgggggtatcagcat-ctatcagcacagac 181
           ||||||||||||||||||| || ||||||||| |||||||||| | |||| |||||||||
Sbjct: 324 ggtattggctgctctcaga-aacatcagggtgagggtatcagc-tgctattagcacagac 381

                                                                       
Query: 182 cccaatggccattgccatcccttgctgccttcctcactttacctggatgtcaagctggca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cccaatggccattgccatcccttgctgccttcctcactttacctggatgtcaagctggca 441

                                                                       
Query: 242 ttcaacattaacttctattttaactacttcacctgtgtatggttgaaactagaatgccaa 301
           |||||||| || ||||||| |||||||||||||||| | |||||||||||||||||| ||
Sbjct: 442 ttcaacat-aatttctattgtaactacttcacctgtctgtggttgaaactagaatgctaa 500

                        
Query: 302 atcggaagtggcc 314
           |  ||||||||||
Sbjct: 501 aaaggaagtggcc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)