BAC Information

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BAC

Clone NameMSMg01-233E05
Chromosome14 (Build37)
Map Location 13,534,014 - 13,534,359
singlet/doubletsinglet
Overlap geneCadps
Upstream genePtprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr, A430083B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233E05.T7 (MSMg01no233_e05.b1)MSMg01-233E05.TJ (MSMg01no233_e05.g1)
ACCAG399522AG399523
length734709
length of high quality
(start - end)		312 (45 - 356)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no233_e05.b1 PHD_FILE: MSMg01no233_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:56 2005CHROMAT_FILE: MSMg01no233_e05.g1 PHD_FILE: MSMg01no233_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGCAGTTGAATCCTTCTCACAGTCTGTTTTACGGGAACCTTCATT
ACCATAACCCGCAGTTCTGCTTCCGGAATGAGGGATCTTCCTTGCGCCGG
TGATGGTTAACTCCCGTCCCGAGTTTTCTTGTCCCGGGTTTTTTTCTTCC
CGGATTTTCTCGTCCCGGATTTTCTCGTCCCGGGTTCTCGGCACCAACTC
TTGCACGCTTTCTCACGACCGGCCAGGAAGAACACAACAAACCAGAATCT
TCTGCGGCAAAACTTTATTGCTTACATCTTCAGGGGCAAGCGTGCAAGCC
TCAAAACCCTTTTAACGAAAGCCCCCTGCTTACATCTTTAGGAGCCAGAG
CGCCAGAGCGCCAGAGCGCCAGAGCGCCAGAGCGCCAGCGCGCAGAGCAA
GAGCTCTATTGTTTACATCTTTAGAAGCATGAGTGCCAGAGCGCCAGAGC
GCCAGAGCGCAAGCAAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAG
GAGAATTATCCTTCGCCTAGGACATATCACTCCCTGATTGGCTGCAGCCC
ATGGCCAAGTTGACGTCACGGGAAAGGCAGAGTACATGTAGTGTAAAAAT
ACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATG
TCAGCGCCATCTTGTGACGGCGAATGTGGGGGCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTATTAGAGATGTAAAGGCATCT
ATAGATTGTCTCTATCCAGCTCTTCCAGATTTATCTGCAAACACTGTAGA
AATTTACAGATGACAAATGTCATTTCCTGATAGTGGGAACATGAATGTTA
TTGTCACTGCCCATCGAGCACAGGCCAAAGGCATGCTGCCTCTGAAGGCT
CTGCTTGTTAACCTATGTGTGGCATTTTTCAAATATCAGAATTAAAGCCA
AAGGAAACATCTTTCCTCATCCATGTCTCTTCAACTTTAGCTGGCTTATA
TTCTTTCTAACACATAACTCCATGGTGGTTTTCTTTTGGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTNTTTTTTNTTTTTTTTTTTTTTNTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNTTTNNTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
NTTTTTNNTTTTTTTTNTNNTTTTTTTTTTTTTTTTNTTTTTTTTNTTTT
TTTTTNNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_e05.g1 MSMg01no233_e05.g1 CHROMAT_FILE:
MSMg01no233_e05.g1 PHD_FILE: MSMg01no233_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:56 2005
         (346 letters)



>mm_chr14_13533814_13534559
          Length = 746

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattagagatgtaaaggcatctatagattgtctctatccagctcttccagatttatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattagagatgtaaaggcatctatagattgtctctatccagctcttccagatttatct 260

                                                                       
Query: 61  gcaaacactgtagaaatttacagatgacaaatgtcatttcctgatagtgggaacatgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaacactgtagaaatttacagatgacaaatgtcatttcctgatagtgggaacatgaat 320

                                                                       
Query: 121 gttattgtcactgcccatcgagcacaggccaaaggcatgctgcctctgaaggctctgctt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gttattgtcactgcccatcgagcacaggtcaaaggcatgctgcctctgaaggctctgctt 380

                                                                       
Query: 181 gttaacctatgtgtggcatttttcaaatatcagaattaaagccaaaggaaacatctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaacctatgtgtggcatttttcaaatatcagaattaaagccaaaggaaacatctttcc 440

                                                                       
Query: 241 tcatccatgtctcttcaactttagctggcttatattctttctaacacataactccatggt 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tcatccatgtctcttcaactttagctggcttaaattctttctaacacataactccatggt 500

                                                         
Query: 301 ggttttcttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 346
           ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ggttttcttttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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