Query= MSMg01no235_b07.b1 MSMg01no235_b07.b1 CHROMAT_FILE:
MSMg01no235_b07.b1 PHD_FILE: MSMg01no235_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:18 2005
(252 letters)
>mm_chr14_80144687_80145334
Length = 648
Score = 422 bits (218), Expect = e-122
Identities = 240/253 (94%), Gaps = 10/253 (3%)
Strand = Plus / Minus
Query: 4 ggaattcctgttcagctgacattctggccttcctgggttgcttggattgattctttcttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggaattcctgttcagctgacattctggccttcctgggttgcttggattgattctttcttt 313
Query: 64 ttgtgttactttcccctgtgttctctctctgcttgcagatttactctggatcttgagaca 123
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 ttgtgttactttcccctgtgt----tctctgcttgcagatttactctggatcttgagaca 257
Query: 124 ctctctgtgtcttgtcttacagatcacttctgtcacctattctaatgaataac------t 177
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 256 ctctctgtgtcttgtcttacagatcacttatgtcacctattctaatgaataactattatt 197
Query: 178 attattattattattattattattattattattattagtggttgttattattctccagtt 237
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 attattattattattattattattattattattattattggttgttattattctccagtt 137
Query: 238 ctaantttttata 250
|||| ||||||||
Sbjct: 136 ctaaatttttata 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 648
Length adjustment: 9
Effective length of query: 243
Effective length of database: 639
Effective search space: 155277
Effective search space used: 155277
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no235_b07.g1 MSMg01no235_b07.g1 CHROMAT_FILE:
MSMg01no235_b07.g1 PHD_FILE: MSMg01no235_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:18 2005
(515 letters)
>mm_chr14_79986628_79987541
Length = 914
Score = 911 bits (471), Expect = 0.0
Identities = 504/515 (97%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 1 caggaaacttcctagtgtgatgtttggctctaaggacggcgggggacgggccggcttact 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 caggaaacttcctagtgtgatgtttggctctaaggacggcgggggacgggg-ggcttact 259
Query: 61 ggttacttagaacacaaagcagcaataagaccattagctataggtcactttcatccacgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggttacttagaacacaaagcagcaataagaccattagctataggtcactttcatccacgc 319
Query: 121 ggtgcctgtgaaacaggcttttcttggtttggaaagccgacttaggaaggaagcttgggg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtgcttgtgaaacaggcttttcttggtttggaaagccgacttaggaaggaagcttgggg 379
Query: 181 tgtggagctctggcatctagcaggccctccggaaaagtccgtcctccatgccggtaacgt 240
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 tgtggagctctggcatctggcaggccctccggaaaactccgtcctccatgccggtaacgt 439
Query: 241 gacttccggcgagccaggccgtccgggttctccacggagagagtcatgcgaactgatgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gacttccggcgagccaggccgtccgggttctccacggagagagtcatgcgaactgatgcg 499
Query: 301 ccatcccgggctctgctgccggaaaagacctggctgccacgacccacctcacgcacaact 360
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 500 ccatcccgggctctgctgccggaaaagacctggctgccacgagtgacgtcacgcacaact 559
Query: 361 tggccgccggcggtagccatgatgaaaaccggagtaaacggagcttaacgtgacacgcct 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 tggccgccggcggtagccatgatgaaaaccggagtaaacggagcttaacgtgacactcct 619
Query: 421 tagcgaagccagaactacctcccgacggatccccagtaccttacagtgggctccgagaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagcgaagccagaactacctcccgacggatccccagtaccttacagtgggctccgagaca 679
Query: 481 atatttcaaagtttacaagccatgccggatccccc 515
||||||||||| |||||||||||||||||||||||
Sbjct: 680 atatttcaaagcttacaagccatgccggatccccc 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space: 456520
Effective search space used: 456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
