BAC Information

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BAC

Clone NameMSMg01-235E14
Chromosome14 (Build37)
Map Location 123,611,102 - 123,611,387
singlet/doubletsinglet
Overlap genenone
Upstream geneClybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneVgcnl1, Itgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235E14.T7 (MSMg01no235_e14.b1)MSMg01-235E14.TJ (MSMg01no235_e14.g1)
ACCAG400905AG400906
length739735
length of high quality
(start - end)
315 (46 - 360)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no235_e14.b1 PHD_FILE: MSMg01no235_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:34 2005CHROMAT_FILE: MSMg01no235_e14.g1 PHD_FILE: MSMg01no235_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAACTGAGGAATAATGAATGGCCAAGAAACATGTAAAGAAATGT
TCAGAGTCCTTAGTCATCAGAGAAATGCAAATCAAAATGACCCTGAGATT
TCATCTCACACCCATCAGAATGGCCAAGATAAAAAACTCAAGTGACAACA
CATGCTAGCAAAGATGTGGAGAAAGATGAACACTCCTCCATTGCTGGTGG
GATTGCCAACTGGAACAACCACTCTGGAAATCAATCTAGAGGTTCCTTAG
TATAAATTGAAAATAGTTCTACCTGAAGACTCAGCTAATCCATTTTGGGC
ATATCCCCTTAATTCTCCCCCNNACANNCCACCCGACAAGTGCTCCACTA
TGTTCATAGCAGCCTTATCCGCAATAGACAGAAACTGGAAAAAAAAAGAT
GTCCCTTAACCAAAGAATGGATAGAGAAATTGTAGTTCATTTACACAATG
GAATACTATACAGCTATTAAAAATGAGGACATCATGGATTTTGCAGGCAA
GTAGATGGAAATAGAAAATATCATCCTGAGTGAGGTAATTCAGACCCAAA
AGGACATGCATGGTGACTGATTAGTGAATATTAGCTAAATAGTATAGAAA
ACCTAGGACACAACCCATAGACTATAAGAAGTGTAAGAAGAAGAAAGGCC
CAAGTGAGGATGGTTCATTCCCACTTAGAAGGGGTAAGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTACGATCTCCCCTGATACTCCC
TTTTTACTAGTATCCTGTACACCAGTACACTGTGTGGTATTATCTGTTGT
TCAATGTCCATCTTCTACCTTCTTTGACAATGCTGGTTCATTGGATAAGA
GGGAGGTAGATGTGAAAATGGCTTGCAGATTGAGAAATGGTCCATCTGAC
AGTATTAGAGGCTGCATTCATTTTTCATACCCATCCTCATTCTGCTAAGA
GCTCCCTGTAGGTTTAAGATGTATTATTATTGCCAAAGGGAAGCCAGTAG
TTGCATTTTATTTATTTCACCCCCCCCCCCTTGATCTCACCACATCCATC
CACAGTGCTCATTCCTTTTCAACTTTCTGAAATATTTGAAGCATTGCAGT
TGTACAAGATGAGGAAGGGAATATCTCTAGACTCTGGAAATACTTCCTCC
TCTGCCTTTAAGTCCTCCAACTACTGGGGCACTAGGATTCCTTGCTCCCT
GGCTTGGGCATTGTGGTGGTCTGAATGAGAAATGTTTTCCAGAAGCTCAT
ATATTTGAATATTTGATAGCTCCTGATTAGTGATATCAGAGAAAGTTATG
AAAGTTTAGGAGGTTGCTCTTTGTTGACCATCATAGACCCTGAGGGGAGG
CTCATGCGTTTAGAGGGTGTGACTTTTCTGTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_e14.g1 MSMg01no235_e14.g1 CHROMAT_FILE:
MSMg01no235_e14.g1 PHD_FILE: MSMg01no235_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:35 2005
         (286 letters)



>mm_chr14_123610902_123611587
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacgatctcccctgatactccctttttactagtatcctgtacaccagtacactgtgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tctacgatctcccctgatactccctttttactagtatcctgtacaccagtacaccgtgtg 260

                                                                       
Query: 61  gtattatctgttgttcaatgtccatcttctaccttctttgacaatgctggttcattggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtattatctgttgttcaatgtccatcttctaccttctttgacaatgctggttcattggat 320

                                                                       
Query: 121 aagagggaggtagatgtgaaaatggcttgcagattgagaaatggtccatctgacagtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagggaggtagatgtgaaaatggcttgcagattgagaaatggtccatctgacagtatt 380

                                                                       
Query: 181 agaggctgcattcatttttcatacccatcctcattctgctaagagctccctgtaggttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggctgcattcatttttcatacccatcctcattctgctaagagctccctgtaggttta 440

                                                         
Query: 241 agatgtattattattgccaaagggaagccagtagttgcattttatt 286
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgtactattattgccaaagggaagccagtagttgcattttatt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)