BAC Information

Click to search

BAC

Clone NameMSMg01-237B18
Chromosome14 (Build37)
Map Location 8,596,364 - 8,596,817
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893
Downstream geneENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237B18.T7 (MSMg01no237_b18.b1)MSMg01-237B18.TJ (MSMg01no237_b18.g1)
ACCAG402159AG402160
length697659
length of high quality
(start - end)
283 (57 - 339)505 (12 - 516)
definitionCHROMAT_FILE: MSMg01no237_b18.b1 PHD_FILE: MSMg01no237_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:50 2005CHROMAT_FILE: MSMg01no237_b18.g1 PHD_FILE: MSMg01no237_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAACATTGGAAAAGCACTAACAGCACTGTGAAGTTTTCTAAGGTG
GACAGCAGGAAGCCTGTCCTTTTCCTATCCTCTCCCTCAGCCCCTCTTCC
CCTACCTGTGTAGGATTTTGAGGTCGAATGTGCATTGTGCACTGCTGCTG
CAAGGTAGCTCTTCCCTGTGGCTGTGCTGAAGCAGCTGGCCAGGGAAGCC
TGGGAGCTGAGGCTCCAGCCTGTGGATTCTCTTTCCTCAGACTTTAGTCT
GTTCCAGGGAGTGGTGTTCTCTCCTGTGGATGTGTGTATANATANNTTTC
CNTTTCTANCCTGTTCACGTAGTTCGGTGCATTCTTCCAGGCATTCTGCA
TGGAAAATATAAACTAGACATTTATTTCAGCATATTGTCATCTTGGGCTG
CATGCCTGTCCTCTCTTATTTCTGTGTCCTCACCATGCCCTTCCCAGCTT
CCTGTTAGCCAAAGGGAATCACTCTTTCTGAACCAAAAGCTCTCAGAGCA
GAGCCTAACCTCCCAGAAAATGCTCTTCTCTACCTAATGCGCCAGATGGG
GGTGGGCCCGAAGCTAATCAGCACTGTATAGGTGGCCTAAAGGACCGGAA
CCCCCAGGCACAGGTGGGAGGTAAGGTCCTAGCAATGGTGCTGAGTG
AACCTACTCCGAGAGACTCTGCCTCAAACAAAGCAAAACACAACAGGATA
TAACCATTCATTCTACCCTGTCCTTCATACAAACTTACAATATTAAATGT
GATTTTTTCCTATTAGCTTATTTTCTTTAGCAAATAGACTTTTCACTTTT
AAAGAAATTAAGTTGTTTTTATTGTTGCTTTTCAAAACTTCAGTGTATAT
TCAGATTACATTCATTATCACACACACACACACACACACACACACACACA
CACACACACACACTATGACTTTCTCCTTGTTTCAGGCTTGAATTCGATCC
TATCTGTTTTGTGCCCCCCCCCACCGTGTCTGCTCACTTGGTAGCACTGT
TGCAGTCCCATTAAGCCACACCTAATCTCCCCACGTATCCTACTCATCAG
TGCATAGTACTCACATAGAGTCGTTGGTTTCCTTTGGACATTTTCCTGCA
CGTGAGTAAGATGCTGAAATGTCCTCTTGCACTTTCATTGTATTTTTTTT
TTATCTTTTTTTTTCTTCTTAAAGATTTATTTATTATACATAAGTACACT
GTAGCTGACTTCAGACACTCCAGAAGAGGGAATCATATCTCATTACAGAT
GGTTGTGAGCCACCATGTGGCCGCTGGGATATGAACTCAGGAACTATGGT
AAAGCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_b18.g1 MSMg01no237_b18.g1 CHROMAT_FILE:
MSMg01no237_b18.g1 PHD_FILE: MSMg01no237_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:50 2005
         (505 letters)



>mm_chr14_8595911_8596817
          Length = 907

 Score =  733 bits (379), Expect = 0.0
 Identities = 431/455 (94%), Gaps = 14/455 (3%)
 Strand = Plus / Minus

                                                                       
Query: 64  tcatacaaacttacaatattaaatgtgattttttcctattagcttattttctttagcaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tcatacaaacttacaatattaaatgtgattttttcctattagcttattttctttagcaaa 848

                                                                       
Query: 124 tagacttttcacttttaaagaaattaagttgtttttattgttgcttttcaaaacttcagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tagacttttcacttttaaagaaattaagttgtttttattgttgcttttcaaaacttcagt 788

                                                                       
Query: 184 gtatattca-gattacattcattat----------cacacacacacacacacacacacac 232
           ||||||||| || ||||||||||||          |||||||||||||||||||||||||
Sbjct: 787 gtatattcagga-tacattcattatcacacacacacacacacacacacacacacacacac 729

                                                                       
Query: 233 acacacacacacacacacactatgactttctccttgtttcaggcttgaattcgatcctat 292
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 728 acacacacacacacacacacaatgactttctccttgtttcaggcttgaatttgatcctat 669

                                                                       
Query: 293 ctgttttgtgcccccccccaccgtgtctgctcacttggtagcactgttgcagtcccatta 352
           |||  |||||  ||| || |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctggcttgtggtccctcctagggtgtctgctcacttggtagcactgttgcagtcccatta 609

                                                                       
Query: 353 agccacacctaatctccccacgtatcctactcatcagtgcatagtactcacatagagtcg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agccacacctaatctccccacgtatcctactcatcagtgcatagtactcacatagagtcg 549

                                                                       
Query: 413 ttggtttcctttggacattttcctgcacgtgagtaagatgctgaaatgtcctcttgcact 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttggtttcctttggacattttcctgcacgtgagtaagatgctgaaatgtcctcttgcact 489

                                              
Query: 473 ttcattgta--ttttttttttatctttttttttct 505
           |||||||||  ||||||||||||||||||||||||
Sbjct: 488 ttcattgtattttttttttttatctttttttttct 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 907
Length adjustment: 10
Effective length of query: 495
Effective length of database: 897
Effective search space:   444015
Effective search space used:   444015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)