BAC Information

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BAC

Clone NameMSMg01-260M15
Chromosome14 (Build37)
Map Location 104,542,638 - 104,543,118
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260M15.T7 (MSMg01no260_m15.b1)MSMg01-260M15.TJ (MSMg01no260_m15.g1)
ACCAG403357AG403358
length758795
length of high quality
(start - end)
477 (44 - 520)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no260_m15.b1 PHD_FILE: MSMg01no260_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:59 2005CHROMAT_FILE: MSMg01no260_m15.g1 PHD_FILE: MSMg01no260_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAATACTTACCCAGCAAAATGATACTATCAACATTGTTCATAATAAT
TTCGGAGGACTCAAAGCTTCATAAAACCTTCAGGTCACCAAGGACACAAT
CCCAATGTATGCAGCATATGAAGACCTGTGAAAACCTCAAATCAAAGGGA
ATAACAACATTTATCAATGCTAAGATGGCATGATATCAAAATTTTTTGAC
AAGAACTTTAAACTTTCTATGATAAAGCAATTACTGCAAGCCGTCGTGAA
TACCCTTGAAACCAACAAACTACTAAAAGTTATAGAAAATATAAAGGAGC
AAATGTATCAAGAAGTATTATAGCCAAAAATTCAGATTCTATTAATATAT
CCAAATATACAGAGACCATATGAATAATAACAGGTCCACATTTATGACCA
AAGTTTTAGGCAGTATCATGGGCAATGCATGCAAAATATAGCTAGAGACA
CTATATTAAAAATGAGAACAATAGAGGATATAATTTTGAATACAGATATC
TATATGTTGAAGTTGTTCCCATGATACATAATTATTTATGGTGCATTATG
CTTTTTAAATAGCACGATGAAGCCTGAGCCCTTATAGTTGGTAGAAATTG
CTTCTAATCCATTAAGGTATAGGGAGGTCCGTTATAATAAGTACCCTGTT
GGCAATGGCACTTATAATGAATCAGTCTAATACTTCCATTTGCATATCAT
TTGCATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGATTTTCCCTATTCCTC
TCTGGCATGCTTGTTGTTCCTGTCCTGGTCCATTTCATAATTAGACAGTC
AGGTTAGAAAAAGAGGTCATGAGTTGAAGAAGAAGAAGGATGGTTTGGAG
GGAGAAAGGGGAGGGAGAAATTTTGTAATTATATTATACTATCAAAAACA
AAGAAGTAGTGGAAAAATTACAAACATTCAATGAATCACAAGATTTAATC
TTAGTTTTAAATGTGAGGGGAAAGTTTGTTTTAGAATTGACTCTTGACCC
CTTTCCTCTTAAATTGAAGGTATATAGCGCCATGGTGTGTCTTCTCTTGG
TGGCGACTGTGATAGCTCCCCCCATGTTACTCGTTGTTCTTCCGCTCCTC
TTATTTTTTATCTTTCCCTCTATTGGTTTTCTTTCCCTTCCTTTTTCGCT
TTTATTTCTGCTTTTTTCGAGGTGCCTTTTCTTTTGCCCTGTTCTCTTGC
CTATTTATTTTCGTTTCTTTGCCGCTGTTTTCTCTTTATACTTCCTTCTT
CTCTTTATCCCCCTTCTTTCCTTTCTTCTCTTCCCCTATTTTACCCATTT
TTCTTTTCCTTTTTCCGTTTCTTTCCCCTTTATTGTCTCCTTCACCATTT
TTTATCCCCCTGTTTCTCTTCTCCCTATTTTTCTTTCGCCCCCCCTCTTT
GTTGTCCCCCTTCTACCTCCTTTCTTTTTCCCACTCCCTGCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_m15.b1 MSMg01no260_m15.b1 CHROMAT_FILE:
MSMg01no260_m15.b1 PHD_FILE: MSMg01no260_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:59 2005
         (477 letters)



>mm_chr14_104542442_104543318
          Length = 877

 Score =  781 bits (404), Expect = 0.0
 Identities = 459/482 (95%), Gaps = 10/482 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatacttacccagcaaaatgatactatcaacattgttcataataatttcggag 64
           ||||||||||||||||  ||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 197 gaattcaaatacttacgaagcaaaacgatactatcaacattgtccataataattttggag 256

                                                                       
Query: 65  gactcaaagcttcataaaaccttcaggtcaccaaggacacaatcccaatgtatgcagcat 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gattcaaagcttcataaaaccttcaggtcaccaaggacacaatcccaatgtatgcagcat 316

                                                                       
Query: 125 atgaagacctgtgaaaacctcaaatcaaagggaataacaacatttatcaatgctaagatg 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atgaagagctgtgaaaacctcaaatcaaagggaataacaacatttatcaatgctaagatg 376

                                                                       
Query: 185 gcatgatatcaaaattttttgacaagaactttaaactttctatgataaagcaattactgc 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcataatatcaaaattttttgacaagaactttaaactttctatgataaagcaattactgc 436

                                                                       
Query: 245 aagccgtcgtgaatacccttgaaaccaacaaactactaaaagttatagaaaatataaagg 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 437 aagccgtcgtgaatacccttgaaaccaacaaactacaaaaagttatagaaaatataaagg 496

                                                                       
Query: 305 agcaaatgtatcaagaagtattatagccaaaaattcagattctattaatatat------- 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 497 agcaaatgtatcaagaagtattatagccaaaaattcagattctattaatatattaatata 556

                                                                       
Query: 358 -ccaaatatacagagaccatatgaataataacaggtccacatttatgaccaaagttttag 416
            |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 557 tccaaatatacagagattatatgaataataacaggtccacatttatgaccacagttttag 616

                                                                       
Query: 417 gcagtatcatgggcaatgcatgcaaaatatagctagagacacta-tattaaaaatgagaa 475
           |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 617 gcagtatcatgggcaatgcatgcaaaatatagctagagacac-agtaataaaaatgagaa 675

             
Query: 476 ca 477
           ||
Sbjct: 676 ca 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)