BAC Information

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BAC

Clone NameMSMg01-261A03
Chromosome5 (Build37)14 (Build37)
Map Location 142,454,260 - 142,454,57622,281,781 - 22,282,226
singlet/doubletsingletsinglet
Overlap geneSdk1
Upstream geneCard11, LOC623466
Downstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261A03.T7 (MSMg01no261_a03.b1)MSMg01-261A03.TJ (MSMg01no261_a03.g1)
ACCAG403517AG403518
length767729
length of high quality
(start - end)		321 (42 - 362)566 (77 - 642)
definitionCHROMAT_FILE: MSMg01no261_a03.b1 PHD_FILE: MSMg01no261_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:17 2005CHROMAT_FILE: MSMg01no261_a03.g1 PHD_FILE: MSMg01no261_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:17 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,454,260 - 142,454,576)(22,281,781 - 22,282,226)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTACCTAGAACCCATCCCTGATTTACAAAAAAACAATGCTAAGGAAGAC
CCTAGCTTATAGCCCAAAAGTTCCATTGTGCTGTGTGGAGCCCCTTGGAG
GAGAATAGTGGCCGAGGGACAACACTATCCCTGCAAGCATTCTGAGTAGA
GGATGAAACATGGAGGTGGTACATGGCCCTTTTGGCAGGGGCTGAGGGGC
AAAGTGGAGCCCTTGTAATTGATGCATGCCCAGCAAGGTGAGAAAGAGAA
AGCTTGTAGCAAGGGGAGGTTACTCAGGATTGGAGACTTTGGGCTTTGTC
CTGGATGCTGCATGATCTGGGAGGCCCTCACAGGGAGAGGCCAGGTCCAT
TGCTATTTGGAGAGAATCAGCATTGATGTTTGTAGAAAGAATGGCTAAGA
AAGGGAAAACGGATGCAGGGCCTGGGGAGGCCACGGGGGGGCAGCTGAGG
TTTCCCTTGCTGGGATCCTGAGAAGGTCTGGGCAAGAGCGTCAGAGAAGC
CTAGGATTGATGGCCAGAACTGCTGCTGCTCGGGTGGGTGTGGGTGGAGC
NTACTCCTATTCCTATCTTTCTCCCCCATTTATTCCCCCCCCTCCCTTTT
ATCTTATTTTTCTCTCTTCTATATGTTCTACTGTTTCCCTCACGTTAATC
CCCGATCTCTTTTTTTTATTTTCTTTCACCGCCCTCCCCGCTTCGCTGCC
CCCCTCGTTGTGTTTCT

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGCCAAAGATGACCTTG
AACCTCTGATCTTCCTGCCACCTTTCCCAAGTGTCAGATTACAAAACCAA
GCATGGTTGCCATTGTACTGGGGACCAAGCTCAAGGCTTCATGCATAAAC
ACTGCCCAACAACTCTTTCTATGTTTTATTTCATATGCATATCCATGTAT
ATGAAATCTTTATCTGTATTTCCTATGTGCACTTTAAGATATAGCCTTGC
TGAGTTCCCATCCTGGCTTCCAGCTCTAGGGTCAAGGGAATCCCTGCCTC
AGCCTTCCAGGTAGCTGAGACTACAGGCGTGCACCACCATGCCTGGGCAC
TTCTATCTCTTTGTTCAGGGTCTAGACAGGACTCCTTCTGCAGACAAGTT
CCCTGGCCTCACAGTCTGGGGTGCAGACACCCCTCCCTGTTTGCAAGGCT
CCCAGAGCTGTGTGAGCCCTCACAGCCAATTCTCTCAACACCTGGCAGTG
CTGTGTGGACAAAGAACTCACACTGTTGTGCTGAGCCTGGTGATTCGGGC
TATAAAACCGCAGGCCAAGTTGTTAAACCCAGATCCAGGTAGACAGCCAG
AGGGCCAAGGTTGCCCTGTATCTGCACTGCGGCAGTCCCCATCTGTGTGG
GTCCCGGTGTGGCCTATTCCCCAGGAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_a03.b1 MSMg01no261_a03.b1 CHROMAT_FILE:
MSMg01no261_a03.b1 PHD_FILE: MSMg01no261_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:17 2005
         (321 letters)



>mm_chr5_142454056_142454776
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacctagaacccatccctgatttacaaaaaaacaatgctaaggaagaccctag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcttacctagaacccatccctgatttacaaaaaaacaatgctaaggaagaccctag 462

                                                                       
Query: 65  cttatagcccaaaagttccattgtgctgtgtggagccccttggaggagaatagtggccga 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cttatagcccaaaagttacattgtgctgtgtggagccccttggaggagaatagtggccga 402

                                                                       
Query: 125 gggacaacactatccctgcaagcattctgagtagaggatgaaacatggaggtggtacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 401 gggacaacactatccctgcaagcattctgagtagaggatgaaacatggaggcggtacatg 342

                                                                       
Query: 185 gcccttttggcaggggctgaggggcaaagtggagcccttgtaattgatgcatgcccagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcccttttggcaggggctgaggggcaaagtggagcccttgtaattgatgcatgcccagca 282

                                                                       
Query: 245 aggtgagaaagagaaagcttgtagcaaggggaggttactcaggattggagactttgggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aggtgagaaagagaaagcttgtagcaaggggaggttactcaggattggagactttgggct 222

                            
Query: 305 ttgtcctggatgctgca 321
           |||||||||||||||||
Sbjct: 221 ttgtcctggatgctgca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_a03.g1 MSMg01no261_a03.g1 CHROMAT_FILE:
MSMg01no261_a03.g1 PHD_FILE: MSMg01no261_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:17 2005
         (566 letters)



>mm_chr14_22281261_22282226
          Length = 966

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 121 aaacactgcccaacaactctttctatgttttatttcatatgcatatccatgtatatgaaa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 966 aaacactgcccaacaactctttctatgttttattttatatgcatatccatgtatatgaaa 907

                                                                       
Query: 181 tctttatctgtatttcctatgtgcactttaagatatagccttgctgagttcccatcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tctttatctgtatttcctatgtgcactttaagatatagccttgctgagttcccatcctgg 847

                                                                       
Query: 241 cttccagctctagggtcaagggaatccctgcctcagccttccaggtagctgagactacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 cttccagctctagggtcaagggaatccctgcctcagccttccaggtagctgagactacag 787

                                                                       
Query: 301 gcgtgcaccaccatgcctgggcacttctatctctttgttcagggtctagacaggactcct 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gcgtgcaccaccgtgcctgggcacttctatctctttgttcagggtctagacaggactcct 727

                                                                       
Query: 361 tctgcagacaagttccctggcctcacagtctggggtgcagacacccctccctgtttgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tctgcagacaagttccctggcctcacagtctggggtgcagacacccctccctgtttgcaa 667

                                                                       
Query: 421 ggctcccagagctgtgtgagccctcacagccaattctctcaacacctggcagtgctgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggctcccagagctgtgtgagccctcacagccaattctctcaacacctggcagtgctgtgt 607

                                                                       
Query: 481 ggacaaagaactcacactgttgtgctgagcctggtgattcgggctataaaaccgcaggcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggacaaagaactcacactgttgtgctgagcctggtgattcgggctataaaaccgcaggcc 547

                                     
Query: 541 aagttgttaaacccagatccaggtag 566
           ||||||||||||||||||||||||||
Sbjct: 546 aagttgttaaacccagatccaggtag 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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